CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.5341s0001
(
Capsella grandiflora
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Cagra.5341s0001
T007791_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.5341s0001.1.p
AP2
90
141
KKYKGVRQKPSGTWSAEIWDPSLKVRRWLGTFPTAEMAAHAYNDAAAGLVGS
Links
Other
AP2
family TFs
Other
Capsella grandiflora
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10015379m.g
Capsella rubella
Carubv10015379m.g
N
0.788
Bostr.7903s0134
Boechera stricta
Bostr.7903s0134
N
0.707
fgenesh1_pm.C_scaffold_8002212
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002212
N
0.694
Carubv10027186m.g
Capsella rubella
Carubv10027186m.g
N
0.691
Bo7g111110
Brassica oleracea
Bo7g111110
N
0.691
Cagra.2007s0001
Capsella grandiflora
Cagra.2007s0001
N
0.691
Bo7g111140
Brassica oleracea
Bo7g111140
N
0.691
Bo7g111070
Brassica oleracea
Bo7g111070
N
0.691