CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10027186m.g
(
Capsella rubella
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Carubv10027186m.g
T007940_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10027186m
AP2
128
179
KKHKGVRKKPSGKWSAEIWDPSLRVRRWLGTFSTAEMAAQAYEEAAAGLVGR
Links
Other
AP2
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.2007s0001
Capsella grandiflora
Cagra.2007s0001
N
0.773
fgenesh1_pm.C_scaffold_8002212
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002212
N
0.712
ERF121
Arabidopsis thaliana
AT5G67010
N
0.696
Carubv10015379m.g
Capsella rubella
Carubv10015379m.g
N
0.691
Cagra.5341s0001
Capsella grandiflora
Cagra.5341s0001
N
0.691
Bostr.7903s0134
Boechera stricta
Bostr.7903s0134
N
0.684
Bo8g051400
Brassica oleracea
Bo8g051400
N
0.682