Carubv10006809m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10006809m.g T007842_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DREB1B
M06643_2.00
Arabidopsis thaliana
DHBRCCGACRHN

NDYGTCGGYVDH
Dap-seq
OMalley et al.(2016)
CBF1_col_a
0.772 0.940
DREB1B
M06644_2.00
Arabidopsis thaliana
NNNHBRCCGACAWNN

NNWTGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF1_colamp_a
0.772 0.940
DREB1C
M01623_2.00
Arabidopsis thaliana
RCCGACAT

ATGTCGGY
PBM
Weirauch et al.(2014)
pTH8187
0.732 0.960
DREB1C
M06639_2.00
Arabidopsis thaliana
NNNHBRCCGACATNN

NNATGTCGGYVDNNN
Dap-seq
OMalley et al.(2016)
CBF2_col_a
0.732 0.960
DREB1C
M06640_2.00
Arabidopsis thaliana
NYBRCCGACATVN

NBATGTCGGYVRN
Dap-seq
OMalley et al.(2016)
CBF2_colamp_a
0.732 0.960
DREB1D
M06678_2.00
Arabidopsis thaliana
NHBRCCGACRTNN

NNAYGTCGGYVDN
Dap-seq
OMalley et al.(2016)
CBF4_col_a
0.698 0.880
DREB1D
M06679_2.00
Arabidopsis thaliana
HYRCCGACATND

HNATGTCGGYRD
Dap-seq
OMalley et al.(2016)
CBF4_colamp_a
0.698 0.880
DREB1A
M01624_2.00
Arabidopsis thaliana
NRCCGACNNN

NNNGTCGGYN
PBM
Weirauch et al.(2014)
pTH8163
0.697 0.900
DREB1A
M01625_2.00
Arabidopsis thaliana
NNRCCGACNW

WNGTCGGYNN
PBM
Weirauch et al.(2014)
pTH9718
0.697 0.900
DREB1A
M06641_2.00
Arabidopsis thaliana
HNYBRCCGACDWNN

NNWHGTCGGYVRND
Dap-seq
OMalley et al.(2016)
CBF3_col_a
0.697 0.900
DREB1A
M06642_2.00
Arabidopsis thaliana
YBRCCGACATN

NATGTCGGYVR
Dap-seq
OMalley et al.(2016)
CBF3_colamp_a
0.697 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006809m AP2 52 103

Links

Other AP2 family TFs
Other Capsella rubella TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
DREB1C Arabidopsis thaliana AT4G25470 D 0.732
DREB1A Arabidopsis thaliana AT4G25480 D 0.697
DREB1B Arabidopsis thaliana AT4G25490 D 0.772
DREB1D Arabidopsis thaliana AT5G51990 D 0.698
Bostr.15774s0346 Boechera stricta Bostr.15774s0346 I 0.698
Bostr.7867s0359 Boechera stricta Bostr.7867s0359 I 0.695
Bostr.7867s0361 Boechera stricta Bostr.7867s0361 I 0.695
Cagra.0094s0011 Capsella grandiflora Cagra.0094s0011 I 0.698
Cagra.2248s0025 Capsella grandiflora Cagra.2248s0025 I 0.786
Cagra.28753s0001 Capsella grandiflora Cagra.28753s0001 I 0.695
Carubv10005709m.g Capsella rubella Carubv10005709m.g I 0.695
Carubv10027759m.g Capsella rubella Carubv10027759m.g I 0.698
gene13329-v1.0-hybrid Fragaria vesca gene13329-v1.0-hybrid I 0.681
Thhalv10015252m.g Eutrema salsugineum Thhalv10015252m.g I 0.698
cassava18935.valid.m1 Manihot esculenta cassava18935.valid.m1 I 0.695
Pm019386 Prunus mume Pm019386 I 0.727
Bo9g104770 Brassica oleracea Bo9g104770 I 0.698
Bra028290 Brassica rapa Bra028290 I 0.698
CBF2 Arabidopsis lyrata fgenesh2_kg.7__1712__AT4G25470.1 I 0.703
GLYMA16G32330 Glycine max GLYMA16G32330 I 0.683
GSMUA_Achr6G13340_001 Musa acuminata GSMUA_Achr6G13340_001 I 0.682
PRUPE_ppa010935mg Prunus persica PRUPE_ppa010935mg I 0.678
CBF4 Arabidopsis lyrata scaffold_801637.1 I 0.698
Solyc03g026270.1 Solanum lycopersicum Solyc03g026270.1 I 0.681
VIT_06s0061g01390 Vitis vinifera VIT_06s0061g01390 I 0.691
Cla002362 Citrullus lanatus Cla002362 I 0.713
PK23332.1 Cannabis sativa PK23332.1 I 0.681