Ciclev10009540m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10009540m.g T007986_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ERF018
M00842_2.00
Arabidopsis thaliana
HRCCGDCMN

NKGHCGGYD
PBM
Franco-Zorrilla et al.(2014)
ORA47
0.787 0.880
ERF018
M01610_2.00
Arabidopsis thaliana
NRCCGNCHN

NDGNCGGYN
PBM
Weirauch et al.(2014)
pTH7215
0.787 0.880
ERF017
M06568_2.00
Arabidopsis thaliana
NHNYCRCCGWCMWH

DWKGWCGGYGRNDN
Dap-seq
OMalley et al.(2016)
At1g19210_col_a
0.786 0.900
ERF017
M06569_2.00
Arabidopsis thaliana
NNNHNNCRCCGWCMW

WKGWCGGYGNNDNNN
Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a
0.786 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10009540m AP2 15 66

Links

Other AP2 family TFs
Other Citrus clementina TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF017 Arabidopsis thaliana AT1G19210 D 0.786
ERF018 Arabidopsis thaliana AT1G74930 D 0.787
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.774
mgf021940m Mimulus guttatus mgf021940m I 0.791
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.741
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.774
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.719
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.786
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.778
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.787
mgf024162m Mimulus guttatus mgf024162m I 0.792
mgf025452m Mimulus guttatus mgf025452m I 0.783
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.796
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.687
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.722
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.787
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.762
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.779
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.786
29739.m003716 Ricinus communis 29739.m003716 I 0.784
29739.m003647 Ricinus communis 29739.m003647 I 0.752
TCM_037415 Theobroma cacao TCM_037415 I 0.777
TCM_037486 Theobroma cacao TCM_037486 I 0.801
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.677
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.695
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.725
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.795
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.799
Ca_01683 Cicer arietinum Ca_01683 I 0.763
Ca_09124 Cicer arietinum Ca_09124 I 0.787
Ca_19295 Cicer arietinum Ca_19295 I 0.744
Ca_19296 Cicer arietinum Ca_19296 I 0.738
Ca_19297 Cicer arietinum Ca_19297 I 0.737
Cla007584 Citrullus lanatus Cla007584 I 0.761
Cla011318 Citrullus lanatus Cla011318 I 0.774
Cla022291 Citrullus lanatus Cla022291 I 0.719
Pm027117 Prunus mume Pm027117 I 0.784
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.722
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.786
MDP0000704216 Malus domestica MDP0000704216 I 0.786
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.822
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.747
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.684
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.684
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.748
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.781
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.783
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.778
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.783
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.794
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.720
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.773
PK18548.1 Cannabis sativa PK18548.1 I 0.743
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.729
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.777
MDP0000649022 Malus domestica MDP0000649022 I 0.775
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.767
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.779
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.786
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.780
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.736
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.778
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.782
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.790
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.798
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.765
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.745
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.757
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.796
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.766
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.767
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.775
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.775
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.742
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.768
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.786
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.787
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.763
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.763
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.762
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.783
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.755
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.762
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.785
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.762
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.747
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.684
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.731
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.712
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.737
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.740
Bra031069 Brassica rapa Bra031069 I 0.795
Bra025719 Brassica rapa Bra025719 I 0.759
ERF016 Arabidopsis thaliana AT5G21960 I 0.720
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.704
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.684
Bo2g023630 Brassica oleracea Bo2g023630 I 0.738
Bo3g015600 Brassica oleracea Bo3g015600 I 0.723
Bo6g086740 Brassica oleracea Bo6g086740 I 0.779
Bo6g119120 Brassica oleracea Bo6g119120 I 0.784
Bo8g068370 Brassica oleracea Bo8g068370 I 0.770
Bo8g102870 Brassica oleracea Bo8g102870 I 0.795
Bo9g149820 Brassica oleracea Bo9g149820 I 0.722
Bra002377 Brassica rapa Bra002377 I 0.722
Bra003780 Brassica rapa Bra003780 I 0.779
Bra006599 Brassica rapa Bra006599 I 0.723
Bra015882 Brassica rapa Bra015882 I 0.790
Bra016518 Brassica rapa Bra016518 I 0.770
Bra020162 Brassica rapa Bra020162 I 0.737
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.684
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.699
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.704
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.704
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.684
OS02G0781300 Oryza sativa OS02G0781300 I 0.704
OS08G0454000 Oryza sativa OS08G0454000 I 0.684
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.774
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.718
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.775
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.786
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.783
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.767
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.784
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.722
Si008104m.g Setaria italica Si008104m.g I 0.717
Si015027m.g Setaria italica Si015027m.g I 0.684
Si019636m.g Setaria italica Si019636m.g I 0.747
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.684
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.704
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.773
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.765
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.765
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.713
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.745
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.745
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.759
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.721
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.721
OB08G24280 Oryza brachyantha OB08G24280 I 0.684
OBART08G16950 Oryza barthii OBART08G16950 I 0.684
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.704
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.684
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.704
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.704
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.684
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.718