CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ab02683
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Ab02683
T009351_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G63040
M06590_2.00
Arabidopsis thaliana
TTGAAA
TTTCAA
Dap-seq
OMalley et al.(2016)
AT1G63040_col_a
0.681
0.833
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ab02683.1.p
AP2
20
69
FYRGIRCRSGKWVSEIREPRKARRIWLGTYPTAEMAAAAYDVAARALRGA
Pavir.Ab02683.2.p
AP2
20
69
FYRGIRCRSGKWVSEIREPRKARRIWLGTYPTAEMAAAAYDVAARALRGA
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy