Pavir.Bb03609 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Bb03609 T009386_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN

NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.683 0.837
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN

NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.683 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb03609.1.p AP2 67 118

Links

Other AP2 family TFs
Other Panicum virgatum TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RAP2-12 Arabidopsis thaliana AT1G53910 D 0.683
Ca_07754 Cicer arietinum Ca_07754 I 0.683
Si036118m.g Setaria italica Si036118m.g I 0.702
Si033388m.g Setaria italica Si033388m.g I 0.685
Si031079m.g Setaria italica Si031079m.g I 0.814
Si030810m.g Setaria italica Si030810m.g I 0.679
Si030514m.g Setaria italica Si030514m.g I 0.692
Si018024m.g Setaria italica Si018024m.g I 0.683
Si002845m.g Setaria italica Si002845m.g I 0.739
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I 0.711
TCM_004710 Theobroma cacao TCM_004710 I 0.679
TCM_026233 Theobroma cacao TCM_026233 I 0.693
Traes_2AS_72E9B68D2 Triticum aestivum Traes_2AS_72E9B68D2 I 0.766
HRE2 Vitis vinifera VIT_07s0005g00820 I 0.679
TRIUR3_28710 Triticum urartu TRIUR3_28710 I 0.705
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.739
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.739
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.712
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I 0.694
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.739
Traes_2BS_5E7287209 Triticum aestivum Traes_2BS_5E7287209 I 0.766
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I 0.711
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.711
POPTR_0007s07090 Populus trichocarpa POPTR_0007s07090 I 0.678
OS10G0390800 Oryza sativa OS10G0390800 I 0.686
OS05G0361700 Oryza sativa OS05G0361700 I 0.680
OS03G0183300 Oryza sativa OS03G0183300 I 0.706
OS01G0313300 Oryza sativa OS01G0313300 I 0.739
ORUFI10G09060 Oryza rufipogon ORUFI10G09060 I 0.686
ORUFI05G14490 Oryza rufipogon ORUFI05G14490 I 0.680
ORUFI02G19470 Oryza rufipogon ORUFI02G19470 I 0.683
POPTR_0011s06010 Populus trichocarpa POPTR_0011s06010 I 0.694
POPTR_0013s04240 Populus trichocarpa POPTR_0013s04240 I 0.690
POPTR_0019s03170 Populus trichocarpa POPTR_0019s03170 I 0.680
RAP2.12 Arabidopsis lyrata scaffold_105235.1 I 0.683
Sb09g017950 Sorghum bicolor Sb09g017950 I 0.678
Sb04g021160 Sorghum bicolor Sb04g021160 I 0.683
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.739
Sb02g042760 Sorghum bicolor Sb02g042760 I 0.811
Sb02g029550 Sorghum bicolor Sb02g029550 I 0.684
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.683
POPTR_0102s00200 Populus trichocarpa POPTR_0102s00200 I 0.680
ORGLA10G0072500 Oryza glaberrima ORGLA10G0072500 I 0.686
LjSGA_017232.1 Lotus japonicus LjSGA_017232.1 I 0.683
Pavir.Ba00410 Panicum virgatum Pavir.Ba00410 I 0.679
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I 0.814
Pavir.Aa02595 Panicum virgatum Pavir.Aa02595 I 0.683
orange1.1g047387m.g Citrus sinensis orange1.1g047387m.g I 0.687
MDP0000668122 Malus domestica MDP0000668122 I 0.686
MDP0000322279 Malus domestica MDP0000322279 I 0.693
MDP0000190237 Malus domestica MDP0000190237 I 0.690
Lus10021873.g Linum usitatissimum Lus10021873.g I 0.700
Pavir.Bb03337 Panicum virgatum Pavir.Bb03337 I 0.677
Pavir.Cb01365 Panicum virgatum Pavir.Cb01365 I 0.678
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.739
Thhalv10011606m.g Eutrema salsugineum Thhalv10011606m.g I 0.683
SapurV1A.0826s0010 Salix purpurea SapurV1A.0826s0010 I 0.698
SapurV1A.0270s0240 Salix purpurea SapurV1A.0270s0240 I 0.689
Pavir.J21082 Panicum virgatum Pavir.J21082 I 0.678
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.739
Pavir.J02402 Panicum virgatum Pavir.J02402 I 0.681
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I 0.706
Pavir.Ia04158 Panicum virgatum Pavir.Ia04158 I 0.696
Lus10006796.g Linum usitatissimum Lus10006796.g I 0.710
Lus10005805.g Linum usitatissimum Lus10005805.g I 0.710
Aquca_076_00008 Aquilegia coerulea Aquca_076_00008 I 0.707
mgf023779m Mimulus guttatus mgf023779m I 0.696
mgf019280m Mimulus guttatus mgf019280m I 0.683
mgf018693m Mimulus guttatus mgf018693m I 0.685
mgf014502m Mimulus guttatus mgf014502m I 0.677
e_gw1.60.113.1 Physcomitrella patens e_gw1.60.113.1 I 0.690
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.700
cassava22677.valid.m1 Manihot esculenta cassava22677.valid.m1 I 0.693
Bostr.10273s0115 Boechera stricta Bostr.10273s0115 I 0.682
Bostr.7128s0090 Boechera stricta Bostr.7128s0090 I 0.683
Cagra.0769s0008 Capsella grandiflora Cagra.0769s0008 I 0.683
Gorai.010G156600 Gossypium raimondii Gorai.010G156600 I 0.698
Gorai.008G075600 Gossypium raimondii Gorai.008G075600 I 0.681
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.693
Gorai.007G045100 Gossypium raimondii Gorai.007G045100 I 0.680
gene06406-v1.0-hybrid Fragaria vesca gene06406-v1.0-hybrid I 0.693
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.693
Ciclev10024142m.g Citrus clementina Ciclev10024142m.g I 0.687
Carubv10009538m.g Capsella rubella Carubv10009538m.g I 0.683
29900.m001561 Ricinus communis 29900.m001561 I 0.705
MTR_1g069945 Medicago truncatula MTR_1g069945 I 0.683
GSMUA_Achr11G15810_001 Musa acuminata GSMUA_Achr11G15810_001 I 0.721
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I 0.684
GSMUA_Achr10G09560_001 Musa acuminata GSMUA_Achr10G09560_001 I 0.699
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.739
GRMZM2G148333 Zea mays GRMZM2G148333 I 0.704
GRMZM2G131281 Zea mays GRMZM2G131281 I 0.684
GRMZM2G114820 Zea mays GRMZM2G114820 I 0.691
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.739
GSMUA_Achr2G17810_001 Musa acuminata GSMUA_Achr2G17810_001 I 0.704
GSMUA_Achr3G08170_001 Musa acuminata GSMUA_Achr3G08170_001 I 0.699
GSMUA_Achr3G08180_001 Musa acuminata GSMUA_Achr3G08180_001 I 0.679
MLOC_64636 Hordeum vulgare MLOC_64636 I 0.679
MLOC_51143 Hordeum vulgare MLOC_51143 I 0.766
GSMUA_Achr10G31090_001 Musa acuminata GSMUA_Achr10G31090_001 I 0.685
GSMUA_AchrUn_randomG27100_001 Musa acuminata GSMUA_AchrUn_randomG27100_001 I 0.706
GSMUA_AchrUn_randomG09790_001 Musa acuminata GSMUA_AchrUn_randomG09790_001 I 0.706
GSMUA_Achr6G27040_001 Musa acuminata GSMUA_Achr6G27040_001 I 0.717
GSMUA_Achr6G25680_001 Musa acuminata GSMUA_Achr6G25680_001 I 0.679
GSMUA_Achr3G15550_001 Musa acuminata GSMUA_Achr3G15550_001 I 0.705
GRMZM2G025062 Zea mays GRMZM2G025062 I 0.811
GRMZM2G016434 Zea mays GRMZM2G016434 I 0.688
Bra021594 Brassica rapa Bra021594 I 0.677
Bo7g048170 Brassica oleracea Bo7g048170 I 0.680
BGIOSGA032849 Oryza indica BGIOSGA032849 I 0.686
BGIOSGA019701 Oryza indica BGIOSGA019701 I 0.680
BGIOSGA011326 Oryza indica BGIOSGA011326 I 0.706
BGIOSGA006362 Oryza indica BGIOSGA006362 I 0.683
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.739
AC206951.3_FG017 Zea mays AC206951.3_FG017 I 0.718
Bra030095 Brassica rapa Bra030095 I 0.680
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.682
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.739
GLYMA19G43815 Glycine max GLYMA19G43815 I 0.688
GLYMA19G34696 Glycine max GLYMA19G34696 I 0.680
GLYMA13G18410 Glycine max GLYMA13G18410 I 0.683
GLYMA10G04210 Glycine max GLYMA10G04210 I 0.683
GLYMA03G31940 Glycine max GLYMA03G31940 I 0.680
ATERF2 Arabidopsis lyrata fgenesh2_kg.8__70__AT5G47220.1 I 0.693
F775_05346 Aegilops tauschii F775_05346 I 0.685
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I 0.690
LPERR02G14620 Leersia perrieri LPERR02G14620 I 0.695
ORGLA05G0114900 Oryza glaberrima ORGLA05G0114900 I 0.680
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.739
ONIVA02G20490 Oryza nivara ONIVA02G20490 I 0.683
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.711
ONIVA05G14090 Oryza nivara ONIVA05G14090 I 0.680
ONIVA10G08250 Oryza nivara ONIVA10G08250 I 0.686
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.739
OPUNC02G16450 Oryza punctata OPUNC02G16450 I 0.683
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.728
OPUNC05G11600 Oryza punctata OPUNC05G11600 I 0.680
Bo3g184310 Brassica oleracea Bo3g184310 I 0.677
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.739
ONIVA03G06110 Oryza nivara ONIVA03G06110 I 0.706
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I 0.706
OMERI10G05820 Oryza meridionalis OMERI10G05820 I 0.686
OBART03G06100 Oryza barthii OBART03G06100 I 0.706
OGLUM10G08400 Oryza glumaepatula OGLUM10G08400 I 0.686
OBART02G18470 Oryza barthii OBART02G18470 I 0.686
OGLUM03G06100 Oryza glumaepatula OGLUM03G06100 I 0.706
OB05G21350 Oryza brachyantha OB05G21350 I 0.680
OGLUM05G14230 Oryza glumaepatula OGLUM05G14230 I 0.680
MTR_6g033255 Medicago truncatula MTR_6g033255 I 0.682
OMERI03G05920 Oryza meridionalis OMERI03G05920 I 0.706
Pavir.J12680 Panicum virgatum Pavir.J12680 N 0.728
OS03G0341000 Oryza sativa OS03G0341000 N 0.801
LPERR03G14670 Leersia perrieri LPERR03G14670 N 0.801
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N 0.713
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N 0.801
OS07G0674800 Oryza sativa OS07G0674800 N 0.801
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N 0.725
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N 0.801
BGIOSGA023726 Oryza indica BGIOSGA023726 N 0.801
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N 0.801
BGIOSGA012597 Oryza indica BGIOSGA012597 N 0.801
LPERR03G05410 Leersia perrieri LPERR03G05410 N 0.681
OPUNC07G24590 Oryza punctata OPUNC07G24590 N 0.801
AC206951.3_FG016 Zea mays AC206951.3_FG016 N 0.721
OMERI07G22780 Oryza meridionalis OMERI07G22780 N 0.801
OMERI03G15020 Oryza meridionalis OMERI03G15020 N 0.801
ONIVA03G06100 Oryza nivara ONIVA03G06100 N 0.713
OBART07G26160 Oryza barthii OBART07G26160 N 0.801
GRMZM2G125460 Zea mays GRMZM2G125460 N 0.696
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N 0.801
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N 0.801
ONIVA03G17860 Oryza nivara ONIVA03G17860 N 0.801
Sb01g045050 Sorghum bicolor Sb01g045050 N 0.733
ONIVA07G25780 Oryza nivara ONIVA07G25780 N 0.801
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N 0.801
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N 0.713
OPUNC03G16250 Oryza punctata OPUNC03G16250 N 0.801
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N 0.713