CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Bb03609
(
Panicum virgatum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Pavir.Bb03609
T009386_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-12
M01046_2.00
Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY
PBM
Sullivan et al.(2014)
pTH7359
0.683
0.837
RAP2-12
M06588_2.00
Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN
Dap-seq
OMalley et al.(2016)
RAP212_col_a
0.683
0.837
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Bb03609.1.p
AP2
67
118
TMYRGIRRRPWGKWAAEIRDPAKGARVWLGTFATAEAAARAYDRAARRIRGS
Links
Other
AP2
family TFs
Other
Panicum virgatum
TFs
178 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si031079m.g
Setaria italica
Si031079m.g
I
0.814
Pavir.Ba00136
Panicum virgatum
Pavir.Ba00136
I
0.814
GRMZM2G025062
Zea mays
GRMZM2G025062
I
0.811
Sb02g042760
Sorghum bicolor
Sb02g042760
I
0.811
OMERI03G15020
Oryza meridionalis
OMERI03G15020
N
0.801
OGLUM07G26170
Oryza glumaepatula
OGLUM07G26170
N
0.801
OMERI07G22780
Oryza meridionalis
OMERI07G22780
N
0.801
OBART07G26160
Oryza barthii
OBART07G26160
N
0.801
LPERR03G14670
Leersia perrieri
LPERR03G14670
N
0.801
ONIVA03G17860
Oryza nivara
ONIVA03G17860
N
0.801
OGLUM03G17210
Oryza glumaepatula
OGLUM03G17210
N
0.801
OPUNC07G24590
Oryza punctata
OPUNC07G24590
N
0.801
OS03G0341000
Oryza sativa
OS03G0341000
N
0.801
OS07G0674800
Oryza sativa
OS07G0674800
N
0.801
ORUFI07G27120
Oryza rufipogon
ORUFI07G27120
N
0.801
ORGLA07G0205000
Oryza glaberrima
ORGLA07G0205000
N
0.801
OPUNC03G16250
Oryza punctata
OPUNC03G16250
N
0.801
ORGLA03G0161100
Oryza glaberrima
ORGLA03G0161100
N
0.801
ONIVA07G25780
Oryza nivara
ONIVA07G25780
N
0.801
ORUFI03G17430
Oryza rufipogon
ORUFI03G17430
N
0.801
BGIOSGA023726
Oryza indica
BGIOSGA023726
N
0.801
BGIOSGA012597
Oryza indica
BGIOSGA012597
N
0.801
Traes_2BS_5E7287209
Triticum aestivum
Traes_2BS_5E7287209
I
0.766
Traes_2AS_72E9B68D2
Triticum aestivum
Traes_2AS_72E9B68D2
I
0.766
MLOC_51143
Hordeum vulgare
MLOC_51143
I
0.766
ORGLA01G0108600
Oryza glaberrima
ORGLA01G0108600
I
0.739
Si002845m.g
Setaria italica
Si002845m.g
I
0.739
Sb03g012890
Sorghum bicolor
Sb03g012890
I
0.739
Pavir.J08480
Panicum virgatum
Pavir.J08480
I
0.739
OPUNC01G12900
Oryza punctata
OPUNC01G12900
I
0.739
OMERI12G11270
Oryza meridionalis
OMERI12G11270
I
0.739
OS01G0313300
Oryza sativa
OS01G0313300
I
0.739
BRADI2G11890
Brachypodium distachyon
BRADI2G11890
I
0.739
BGIOSGA003364
Oryza indica
BGIOSGA003364
I
0.739
Pavir.Eb02324
Panicum virgatum
Pavir.Eb02324
I
0.739
Traes_5DL_41E3B1B23
Triticum aestivum
Traes_5DL_41E3B1B23
I
0.739
GRMZM2G169382
Zea mays
GRMZM2G169382
I
0.739
GRMZM2G053503
Zea mays
GRMZM2G053503
I
0.739
Traes_5BL_98D063967
Triticum aestivum
Traes_5BL_98D063967
I
0.739
TRAES3BF171600010CFD_g
Triticum aestivum
TRAES3BF171600010CFD_g
I
0.739
Sb01g045050
Sorghum bicolor
Sb01g045050
N
0.733
OPUNC03G05900
Oryza punctata
OPUNC03G05900
I
0.728
Pavir.J12680
Panicum virgatum
Pavir.J12680
N
0.728
Pavir.Ib00527
Panicum virgatum
Pavir.Ib00527
N
0.725
GSMUA_Achr11G15810_001
Musa acuminata
GSMUA_Achr11G15810_001
I
0.721
AC206951.3_FG016
Zea mays
AC206951.3_FG016
N
0.721
AC206951.3_FG017
Zea mays
AC206951.3_FG017
I
0.718
GSMUA_Achr6G27040_001
Musa acuminata
GSMUA_Achr6G27040_001
I
0.717
ORGLA03G0058800
Oryza glaberrima
ORGLA03G0058800
N
0.713
ORUFI03G05920
Oryza rufipogon
ORUFI03G05920
N
0.713
ONIVA03G06100
Oryza nivara
ONIVA03G06100
N
0.713
OGLUM03G06090
Oryza glumaepatula
OGLUM03G06090
N
0.713
Traes_4BL_7EC2BFC7B
Triticum aestivum
Traes_4BL_7EC2BFC7B
I
0.712
SELMODRAFT_73164
Selaginella moellendorffii
SELMODRAFT_73164
I
0.711
SELMODRAFT_73169
Selaginella moellendorffii
SELMODRAFT_73169
I
0.711
SELMODRAFT_17703
Selaginella moellendorffii
SELMODRAFT_17703
I
0.711
SELMODRAFT_73134
Selaginella moellendorffii
SELMODRAFT_73134
I
0.711
Lus10006796.g
Linum usitatissimum
Lus10006796.g
I
0.710
Lus10005805.g
Linum usitatissimum
Lus10005805.g
I
0.710
Aquca_076_00008
Aquilegia coerulea
Aquca_076_00008
I
0.707
GSMUA_AchrUn_randomG27100_001
Musa acuminata
GSMUA_AchrUn_randomG27100_001
I
0.706
ONIVA03G06110
Oryza nivara
ONIVA03G06110
I
0.706
ORGLA03G0058900
Oryza glaberrima
ORGLA03G0058900
I
0.706
GSMUA_AchrUn_randomG09790_001
Musa acuminata
GSMUA_AchrUn_randomG09790_001
I
0.706
Pavir.Ib00528
Panicum virgatum
Pavir.Ib00528
I
0.706
OMERI03G05920
Oryza meridionalis
OMERI03G05920
I
0.706
OBART03G06100
Oryza barthii
OBART03G06100
I
0.706
BGIOSGA011326
Oryza indica
BGIOSGA011326
I
0.706
OGLUM03G06100
Oryza glumaepatula
OGLUM03G06100
I
0.706
OS03G0183300
Oryza sativa
OS03G0183300
I
0.706
TRIUR3_28710
Triticum urartu
TRIUR3_28710
I
0.705
GSMUA_Achr3G15550_001
Musa acuminata
GSMUA_Achr3G15550_001
I
0.705
29900.m001561
Ricinus communis
29900.m001561
I
0.705
GSMUA_Achr2G17810_001
Musa acuminata
GSMUA_Achr2G17810_001
I
0.704
GRMZM2G148333
Zea mays
GRMZM2G148333
I
0.704
Si036118m.g
Setaria italica
Si036118m.g
I
0.702
cassava47179.m1
Manihot esculenta
cassava47179.m1
I
0.700
Lus10021873.g
Linum usitatissimum
Lus10021873.g
I
0.700
GSMUA_Achr3G08170_001
Musa acuminata
GSMUA_Achr3G08170_001
I
0.699
GSMUA_Achr10G09560_001
Musa acuminata
GSMUA_Achr10G09560_001
I
0.699
SapurV1A.0826s0010
Salix purpurea
SapurV1A.0826s0010
I
0.698
Gorai.010G156600
Gossypium raimondii
Gorai.010G156600
I
0.698
mgf023779m
Mimulus guttatus
mgf023779m
I
0.696
Pavir.Ia04158
Panicum virgatum
Pavir.Ia04158
I
0.696
GRMZM2G125460
Zea mays
GRMZM2G125460
N
0.696
LPERR02G14620
Leersia perrieri
LPERR02G14620
I
0.695
Traes_4AS_8A64DBE8E
Triticum aestivum
Traes_4AS_8A64DBE8E
I
0.694
POPTR_0011s06010
Populus trichocarpa
POPTR_0011s06010
I
0.694
cassava22677.valid.m1
Manihot esculenta
cassava22677.valid.m1
I
0.693
Gorai.007G281000
Gossypium raimondii
Gorai.007G281000
I
0.693
evm.TU.supercontig_162.25
Carica papaya
evm.TU.supercontig_162.25
I
0.693
TCM_026233
Theobroma cacao
TCM_026233
I
0.693
ATERF2
Arabidopsis lyrata
fgenesh2_kg.8__70__AT5G47220.1
I
0.693
gene06406-v1.0-hybrid
Fragaria vesca
gene06406-v1.0-hybrid
I
0.693
MDP0000322279
Malus domestica
MDP0000322279
I
0.693
Si030514m.g
Setaria italica
Si030514m.g
I
0.692
GRMZM2G114820
Zea mays
GRMZM2G114820
I
0.691
MDP0000190237
Malus domestica
MDP0000190237
I
0.690
BRADI5G25570
Brachypodium distachyon
BRADI5G25570
I
0.690
POPTR_0013s04240
Populus trichocarpa
POPTR_0013s04240
I
0.690
e_gw1.60.113.1
Physcomitrella patens
e_gw1.60.113.1
I
0.690
SapurV1A.0270s0240
Salix purpurea
SapurV1A.0270s0240
I
0.689
GRMZM2G016434
Zea mays
GRMZM2G016434
I
0.688
GLYMA19G43815
Glycine max
GLYMA19G43815
I
0.688
Ciclev10024142m.g
Citrus clementina
Ciclev10024142m.g
I
0.687
orange1.1g047387m.g
Citrus sinensis
orange1.1g047387m.g
I
0.687
BGIOSGA032849
Oryza indica
BGIOSGA032849
I
0.686
ORGLA10G0072500
Oryza glaberrima
ORGLA10G0072500
I
0.686
MDP0000668122
Malus domestica
MDP0000668122
I
0.686
OMERI10G05820
Oryza meridionalis
OMERI10G05820
I
0.686
ORUFI10G09060
Oryza rufipogon
ORUFI10G09060
I
0.686
OGLUM10G08400
Oryza glumaepatula
OGLUM10G08400
I
0.686
OS10G0390800
Oryza sativa
OS10G0390800
I
0.686
OBART02G18470
Oryza barthii
OBART02G18470
I
0.686
ONIVA10G08250
Oryza nivara
ONIVA10G08250
I
0.686
GSMUA_Achr10G31090_001
Musa acuminata
GSMUA_Achr10G31090_001
I
0.685
Si033388m.g
Setaria italica
Si033388m.g
I
0.685
F775_05346
Aegilops tauschii
F775_05346
I
0.685
mgf018693m
Mimulus guttatus
mgf018693m
I
0.685
GSMUA_Achr10G19950_001
Musa acuminata
GSMUA_Achr10G19950_001
I
0.684
Sb02g029550
Sorghum bicolor
Sb02g029550
I
0.684
GRMZM2G131281
Zea mays
GRMZM2G131281
I
0.684
mgf019280m
Mimulus guttatus
mgf019280m
I
0.683
Ca_07754
Cicer arietinum
Ca_07754
I
0.683
Carubv10009538m.g
Capsella rubella
Carubv10009538m.g
I
0.683
GLYMA13G18410
Glycine max
GLYMA13G18410
I
0.683
Bostr.7128s0090
Boechera stricta
Bostr.7128s0090
I
0.683
MTR_1g069945
Medicago truncatula
MTR_1g069945
I
0.683
ONIVA02G20490
Oryza nivara
ONIVA02G20490
I
0.683
Pavir.Aa02595
Panicum virgatum
Pavir.Aa02595
I
0.683
LjSGA_017232.1
Lotus japonicus
LjSGA_017232.1
I
0.683
ORUFI02G19470
Oryza rufipogon
ORUFI02G19470
I
0.683
Thhalv10011606m.g
Eutrema salsugineum
Thhalv10011606m.g
I
0.683
OPUNC02G16450
Oryza punctata
OPUNC02G16450
I
0.683
RAP2-12
Arabidopsis thaliana
AT1G53910
D
0.683
BGIOSGA006362
Oryza indica
BGIOSGA006362
I
0.683
RAP2.12
Arabidopsis lyrata
scaffold_105235.1
I
0.683
Cagra.0769s0008
Capsella grandiflora
Cagra.0769s0008
I
0.683
Si018024m.g
Setaria italica
Si018024m.g
I
0.683
GLYMA10G04210
Glycine max
GLYMA10G04210
I
0.683
Sb04g021160
Sorghum bicolor
Sb04g021160
I
0.683
Sb01g045040
Sorghum bicolor
Sb01g045040
I
0.683
BRADI1G72450
Brachypodium distachyon
BRADI1G72450
I
0.682
Bostr.10273s0115
Boechera stricta
Bostr.10273s0115
I
0.682
MTR_6g033255
Medicago truncatula
MTR_6g033255
I
0.682
LPERR03G05410
Leersia perrieri
LPERR03G05410
N
0.681
Pavir.J02402
Panicum virgatum
Pavir.J02402
I
0.681
Gorai.008G075600
Gossypium raimondii
Gorai.008G075600
I
0.681
Gorai.007G045100
Gossypium raimondii
Gorai.007G045100
I
0.680
OS05G0361700
Oryza sativa
OS05G0361700
I
0.680
Bra030095
Brassica rapa
Bra030095
I
0.680
Bo7g048170
Brassica oleracea
Bo7g048170
I
0.680
OGLUM05G14230
Oryza glumaepatula
OGLUM05G14230
I
0.680
OB05G21350
Oryza brachyantha
OB05G21350
I
0.680
GLYMA19G34696
Glycine max
GLYMA19G34696
I
0.680
GLYMA03G31940
Glycine max
GLYMA03G31940
I
0.680
OPUNC05G11600
Oryza punctata
OPUNC05G11600
I
0.680
ONIVA05G14090
Oryza nivara
ONIVA05G14090
I
0.680
ORGLA05G0114900
Oryza glaberrima
ORGLA05G0114900
I
0.680
POPTR_0102s00200
Populus trichocarpa
POPTR_0102s00200
I
0.680
POPTR_0019s03170
Populus trichocarpa
POPTR_0019s03170
I
0.680
ORUFI05G14490
Oryza rufipogon
ORUFI05G14490
I
0.680
BGIOSGA019701
Oryza indica
BGIOSGA019701
I
0.680
Si030810m.g
Setaria italica
Si030810m.g
I
0.679
GSMUA_Achr3G08180_001
Musa acuminata
GSMUA_Achr3G08180_001
I
0.679
GSMUA_Achr6G25680_001
Musa acuminata
GSMUA_Achr6G25680_001
I
0.679
Pavir.Ba00410
Panicum virgatum
Pavir.Ba00410
I
0.679
HRE2
Vitis vinifera
VIT_07s0005g00820
I
0.679
TCM_004710
Theobroma cacao
TCM_004710
I
0.679
MLOC_64636
Hordeum vulgare
MLOC_64636
I
0.679
Pavir.J21082
Panicum virgatum
Pavir.J21082
I
0.678
POPTR_0007s07090
Populus trichocarpa
POPTR_0007s07090
I
0.678
Sb09g017950
Sorghum bicolor
Sb09g017950
I
0.678
Pavir.Cb01365
Panicum virgatum
Pavir.Cb01365
I
0.678
Bra021594
Brassica rapa
Bra021594
I
0.677
Bo3g184310
Brassica oleracea
Bo3g184310
I
0.677
mgf014502m
Mimulus guttatus
mgf014502m
I
0.677
Pavir.Bb03337
Panicum virgatum
Pavir.Bb03337
I
0.677