Pavir.Gb00344 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Gb00344 T009476_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb00344.1.p AP2 48 84
Pavir.Gb00344.1.p AP2 128 179
Pavir.Gb00344.2.p AP2 28 79
Pavir.Gb00344.3.p AP2 29 80

Links

Other AP2 family TFs
Other Panicum virgatum TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G076602 Zea mays GRMZM2G076602 N 0.835
Traes_2AL_5BA7E2623 Triticum aestivum Traes_2AL_5BA7E2623 N 0.833
MLOC_43830 Hordeum vulgare MLOC_43830 N 0.833
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.813
LjSGA_043732.1 Lotus japonicus LjSGA_043732.1 N 0.813
OB05G11530 Oryza brachyantha OB05G11530 N 0.797
MLOC_77763 Hordeum vulgare MLOC_77763 N 0.793
PRUPE_ppa021782mg Prunus persica PRUPE_ppa021782mg N 0.787
MDP0000204900 Malus domestica MDP0000204900 N 0.779
PGSC0003DMG400006604 Solanum tuberosum PGSC0003DMG400006604 N 0.764
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.760
TRIUR3_24919 Triticum urartu TRIUR3_24919 N 0.760
Traes_5DL_E88449625 Triticum aestivum Traes_5DL_E88449625 N 0.760
Traes_5BL_5117B3E2A Triticum aestivum Traes_5BL_5117B3E2A N 0.760
OB07G16010 Oryza brachyantha OB07G16010 N 0.758
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.735
PDK_20s1709981g002 Phoenix dactylifera PDK_20s1709981g002 N 0.713
Eucgr.A01182 Eucalyptus grandis Eucgr.A01182 N 0.707
PDK_20s1337001g001 Phoenix dactylifera PDK_20s1337001g001 N 0.685