LjSGA_091069.2 (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 LjSGA_091069.2 T010302_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF1A
M00848_2.00 		Arabidopsis thaliana
NNNNRNN
NNYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATERF1 		0.696 0.778
ERF1A
M00720_2.00 		Arabidopsis thaliana
NMGCCRNCN
NGNYGGCKN		 PBM
Chang et al.(2013)
pTH7202 		0.696 0.778
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.692 0.822
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.692 0.822
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.692 0.822
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.692 0.822
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.692 0.822
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.691 0.733
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.691 0.733
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.689 0.822
ERF2
M01631_2.00 		Arabidopsis thaliana
NNNGCCGNCN
NGNCGGCNNN		 PBM
Weirauch et al.(2014)
pTH8113 		0.687 0.778
ERF2
M06672_2.00 		Arabidopsis thaliana
HHNHHNYHDYCGCCGCCRYND
HNRYGGCGGCGRHDRNDDNDD		 Dap-seq
OMalley et al.(2016)
ERF2_col_a 		0.687 0.778
ERF2
M06673_2.00 		Arabidopsis thaliana
NNNNNNNHNNHDSMGCCGCCR
YGGCGGCKSHDNNDNNNNNNN		 Dap-seq
OMalley et al.(2016)
ERF2_colamp_a 		0.687 0.778
ERF15
M00718_2.00 		Arabidopsis thaliana
NGSCGSCB
VGSCGSCN		 PBM
Chang et al.(2013)
pTH7336 		0.682 0.800
ERF15
M06604_2.00 		Arabidopsis thaliana
NNNHNNHDBMGCCGCCDY
RHGGCGGCKVHDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF15_colamp_a 		0.682 0.800
ERF15
M06605_2.00 		Arabidopsis thaliana
NNYHDYMGCCGCCRY
RYGGCGGCKRHDRNN		 Dap-seq
OMalley et al.(2016)
ERF15_col 		0.682 0.800
ERF106
M01628_2.00 		Arabidopsis thaliana
NNNVCRVCN
NGBYGBNNN		 PBM
Weirauch et al.(2014)
pTH7426 		0.677 0.733
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_091069.2 AP2 20 68

Links

Other AP2 family TFs
Other Lotus japonicus TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr5.CM0494.330.nc Lotus japonicus chr5.CM0494.330.nc I 0.811
MTR_1g069985 Medicago truncatula MTR_1g069985 I 0.792
MTR_1g070020 Medicago truncatula MTR_1g070020 I 0.767
MTR_1g070045 Medicago truncatula MTR_1g070045 I 0.767
MTR_1g070015 Medicago truncatula MTR_1g070015 I 0.766
MTR_1g070000 Medicago truncatula MTR_1g070000 I 0.766
chr5.CM0494.320.nc Lotus japonicus chr5.CM0494.320.nc I 0.758
Traes_5BL_FBC7AF288 Triticum aestivum Traes_5BL_FBC7AF288 I 0.744
Solyc09g089930.1 Solanum lycopersicum Solyc09g089930.1 I 0.728
PGSC0003DMG400017231 Solanum tuberosum PGSC0003DMG400017231 I 0.728
PK23186.1 Cannabis sativa PK23186.1 I 0.728
PGSC0003DMG400014204 Solanum tuberosum PGSC0003DMG400014204 I 0.723
Solyc03g005520.1 Solanum lycopersicum Solyc03g005520.1 I 0.723
PGSC0003DMG400013402 Solanum tuberosum PGSC0003DMG400013402 I 0.723
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I 0.713
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I 0.706
GLYMA03G26310 Glycine max GLYMA03G26310 I 0.706
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I 0.705
Pm017700 Prunus mume Pm017700 I 0.705
Pm017698 Prunus mume Pm017698 I 0.705
PGSC0003DMG400013257 Solanum tuberosum PGSC0003DMG400013257 I 0.705
MDP0000135205 Malus domestica MDP0000135205 I 0.705
MDP0000122665 Malus domestica MDP0000122665 I 0.705
Bostr.19424s0319 Boechera stricta Bostr.19424s0319 I 0.704
VIT_15s0021g01630 Vitis vinifera VIT_15s0021g01630 I 0.704
VIT_15s0021g01590 Vitis vinifera VIT_15s0021g01590 I 0.703
VIT_15s0021g01610 Vitis vinifera VIT_15s0021g01610 I 0.703
VIT_15s0021g01600 Vitis vinifera VIT_15s0021g01600 I 0.703
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I 0.701
Bostr.14419s0016 Boechera stricta Bostr.14419s0016 I 0.701
Bo7g040820 Brassica oleracea Bo7g040820 I 0.700
GLYMA13G18340 Glycine max GLYMA13G18340 I 0.700
Bra014924 Brassica rapa Bra014924 I 0.700
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.699
orange1.1g043029m.g Citrus sinensis orange1.1g043029m.g I 0.699
Traes_2AL_0B28B6DBE Triticum aestivum Traes_2AL_0B28B6DBE I 0.699
Ciclev10023352m.g Citrus clementina Ciclev10023352m.g I 0.699
PGSC0003DMG400013256 Solanum tuberosum PGSC0003DMG400013256 I 0.698
PRUPE_ppa020417mg Prunus persica PRUPE_ppa020417mg I 0.697
Pm017697 Prunus mume Pm017697 I 0.697
Gorai.004G220800 Gossypium raimondii Gorai.004G220800 I 0.697
mgf021756m Mimulus guttatus mgf021756m I 0.697
OBART03G41810 Oryza barthii OBART03G41810 I 0.697
ORGLA03G0387300 Oryza glaberrima ORGLA03G0387300 I 0.697
OMERI03G15490 Oryza meridionalis OMERI03G15490 I 0.697
OLONG_002067 Oryza longistaminata OLONG_002067 I 0.697
OS03G0860100 Oryza sativa OS03G0860100 I 0.697
OGLUM03G41640 Oryza glumaepatula OGLUM03G41640 I 0.697
ONIVA01G48030 Oryza nivara ONIVA01G48030 I 0.697
ORUFI03G43580 Oryza rufipogon ORUFI03G43580 I 0.697
BGIOSGA009392 Oryza indica BGIOSGA009392 I 0.697
Bo8g049470 Brassica oleracea Bo8g049470 I 0.696
Carubv10005497m.g Capsella rubella Carubv10005497m.g I 0.696
Thhalv10001003m.g Eutrema salsugineum Thhalv10001003m.g I 0.696
Bostr.30275s0207 Boechera stricta Bostr.30275s0207 I 0.696
Cagra.3356s0041 Capsella grandiflora Cagra.3356s0041 I 0.696
Cagra.3675s0007 Capsella grandiflora Cagra.3675s0007 I 0.696
Bra040159 Brassica rapa Bra040159 I 0.696
Carubv10027108m.g Capsella rubella Carubv10027108m.g I 0.696
Bo1g017590 Brassica oleracea Bo1g017590 I 0.696
Bra021047 Brassica rapa Bra021047 I 0.696
Aquca_067_00004 Aquilegia coerulea Aquca_067_00004 I 0.696
ATERF-1 Arabidopsis lyrata fgenesh2_kg.7__2559__AT4G17500.1 I 0.696
ERF1A Arabidopsis thaliana AT4G17500 D 0.696
Bra021048 Brassica rapa Bra021048 I 0.696
mgf017485m Mimulus guttatus mgf017485m I 0.696
GSMUA_Achr5G12530_001 Musa acuminata GSMUA_Achr5G12530_001 I 0.695
GLYMA03G26530 Glycine max GLYMA03G26530 I 0.694
Ca_02325 Cicer arietinum Ca_02325 I 0.694
Thhalv10022200m.g Eutrema salsugineum Thhalv10022200m.g I 0.693
F775_22020 Aegilops tauschii F775_22020 I 0.693
Solyc11g011750.1 Solanum lycopersicum Solyc11g011750.1 I 0.693
Traes_4AL_1A0E673DC Triticum aestivum Traes_4AL_1A0E673DC I 0.693
Carubv10014553m.g Capsella rubella Carubv10014553m.g I 0.692
Bo1g102210 Brassica oleracea Bo1g102210 I 0.692
ERF1B Arabidopsis thaliana AT3G23240 D 0.692
Solyc01g090310.2 Solanum lycopersicum Solyc01g090310.2 I 0.692
Solyc11g011740.1 Solanum lycopersicum Solyc11g011740.1 I 0.692
PGSC0003DMG400041045 Solanum tuberosum PGSC0003DMG400041045 I 0.692
Thhalv10022374m.g Eutrema salsugineum Thhalv10022374m.g I 0.692
ERF1 Arabidopsis lyrata scaffold_302806.1 I 0.692
Cagra.8559s0001 Capsella grandiflora Cagra.8559s0001 I 0.692
Bra023746 Brassica rapa Bra023746 I 0.692
Bra023745 Brassica rapa Bra023745 I 0.692
PGSC0003DMG400013255 Solanum tuberosum PGSC0003DMG400013255 I 0.692
Bo2g132270 Brassica oleracea Bo2g132270 I 0.691
Bra022115 Brassica rapa Bra022115 I 0.691
ERF095 Arabidopsis thaliana AT3G23220 D 0.691
PGSC0003DMG400026046 Solanum tuberosum PGSC0003DMG400026046 I 0.691
MLOC_77420 Hordeum vulgare MLOC_77420 I 0.689
Traes_4AL_5E86DF14B Triticum aestivum Traes_4AL_5E86DF14B I 0.689
F775_52314 Aegilops tauschii F775_52314 I 0.689
Traes_4BL_39AE2989D Triticum aestivum Traes_4BL_39AE2989D I 0.689
e_gw1.72.116.1 Physcomitrella patens e_gw1.72.116.1 I 0.689
Traes_5DL_53D8DF9CD Triticum aestivum Traes_5DL_53D8DF9CD I 0.689
Q5Y836_TOBAC Nicotiana tabacum Q5Y836_TOBAC D 0.689
e_gw1.53.114.1 Physcomitrella patens e_gw1.53.114.1 I 0.689
Traes_5BL_4E044468C Triticum aestivum Traes_5BL_4E044468C I 0.689
mgf020623m Mimulus guttatus mgf020623m I 0.688
PGSC0003DMG400026260 Solanum tuberosum PGSC0003DMG400026260 I 0.688
Solyc08g078170.1 Solanum lycopersicum Solyc08g078170.1 I 0.688
Solyc01g090370.1 Solanum lycopersicum Solyc01g090370.1 I 0.688
30174.m008759 Ricinus communis 30174.m008759 I 0.688
Gorai.004G195200 Gossypium raimondii Gorai.004G195200 I 0.687
ERF2 Arabidopsis thaliana AT5G47220 D 0.687
PGSC0003DMG400026049 Solanum tuberosum PGSC0003DMG400026049 I 0.687
Solyc03g093530.1 Solanum lycopersicum Solyc03g093530.1 I 0.687
Lus10006579.g Linum usitatissimum Lus10006579.g I 0.687
Solyc09g066340.1 Solanum lycopersicum Solyc09g066340.1 I 0.687
Gorai.004G195000 Gossypium raimondii Gorai.004G195000 I 0.687
gene10841-v1.0-hybrid Fragaria vesca gene10841-v1.0-hybrid I 0.686
Ca_17212 Cicer arietinum Ca_17212 I 0.686
Gorai.008G232500 Gossypium raimondii Gorai.008G232500 I 0.686
28192.m000255 Ricinus communis 28192.m000255 I 0.686
Ca_12775 Cicer arietinum Ca_12775 I 0.686
Cucsa.321160 Cucumis sativus Cucsa.321160 I 0.686
Cla005705 Citrullus lanatus Cla005705 I 0.686
GSMUA_Achr5G21050_001 Musa acuminata GSMUA_Achr5G21050_001 I 0.686
Pm023376 Prunus mume Pm023376 I 0.686
cassava4871.m1 Manihot esculenta cassava4871.m1 I 0.686
LjSGA_146586.1 Lotus japonicus LjSGA_146586.1 I 0.686
GLYMA11G03910 Glycine max GLYMA11G03910 I 0.686
SapurV1A.1153s0050 Salix purpurea SapurV1A.1153s0050 I 0.686
MDP0000787281 Malus domestica MDP0000787281 I 0.686
Gorai.006G214100 Gossypium raimondii Gorai.006G214100 I 0.686
orange1.1g044938m.g Citrus sinensis orange1.1g044938m.g I 0.686
PRUPE_ppa009707mg Prunus persica PRUPE_ppa009707mg I 0.686
Ciclev10021652m.g Citrus clementina Ciclev10021652m.g I 0.686
POPTR_0001s15390 Populus trichocarpa POPTR_0001s15390 I 0.686
POPTR_0003s07910 Populus trichocarpa POPTR_0003s07910 I 0.686
MDP0000665685 Malus domestica MDP0000665685 I 0.686
MDP0000299277 Malus domestica MDP0000299277 I 0.686
TCM_015898 Theobroma cacao TCM_015898 I 0.686
PK29475.1 Cannabis sativa PK29475.1 I 0.686
VIT_02s0234g00130 Vitis vinifera VIT_02s0234g00130 I 0.686
Lus10004368.g Linum usitatissimum Lus10004368.g I 0.686
MTR_4g100380 Medicago truncatula MTR_4g100380 I 0.686
GLYMA01G41520 Glycine max GLYMA01G41520 I 0.686
GLYMA05G05180 Glycine max GLYMA05G05180 I 0.686
GLYMA17G15480 Glycine max GLYMA17G15480 I 0.686
Lus10032498.g Linum usitatissimum Lus10032498.g I 0.685
Solyc09g066360.1 Solanum lycopersicum Solyc09g066360.1 I 0.685
GSMUA_Achr11G20930_001 Musa acuminata GSMUA_Achr11G20930_001 I 0.685
LPERR03G35710 Leersia perrieri LPERR03G35710 I 0.684
Gorai.004G195100 Gossypium raimondii Gorai.004G195100 I 0.684
Gorai.008G108600 Gossypium raimondii Gorai.008G108600 I 0.684
Cla003706 Citrullus lanatus Cla003706 I 0.684
Cucsa.129630 Cucumis sativus Cucsa.129630 I 0.684
PGSC0003DMG400010285 Solanum tuberosum PGSC0003DMG400010285 I 0.684
Bra032512 Brassica rapa Bra032512 I 0.683
Solyc08g007230.1 Solanum lycopersicum Solyc08g007230.1 I 0.683
PGSC0003DMG400002272 Solanum tuberosum PGSC0003DMG400002272 I 0.683
Bo8g115580 Brassica oleracea Bo8g115580 I 0.683
TCM_005704 Theobroma cacao TCM_005704 I 0.683
Bo4g052480 Brassica oleracea Bo4g052480 I 0.683
Lus10013959.g Linum usitatissimum Lus10013959.g I 0.683
SapurV1A.0124s0180 Salix purpurea SapurV1A.0124s0180 I 0.683
Bra018271 Brassica rapa Bra018271 I 0.683
BRADI3G50490 Brachypodium distachyon BRADI3G50490 I 0.683
Pavir.Ab02556 Panicum virgatum Pavir.Ab02556 I 0.682
Pavir.Aa01184 Panicum virgatum Pavir.Aa01184 I 0.682
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.682
GRMZM2G466044 Zea mays GRMZM2G466044 I 0.682
Cagra.6952s0002 Capsella grandiflora Cagra.6952s0002 I 0.682
ERF15 Arabidopsis thaliana AT2G31230 D 0.682
Bo7g098850 Brassica oleracea Bo7g098850 I 0.682
Bostr.25993s0288 Boechera stricta Bostr.25993s0288 I 0.682
Carubv10025229m.g Capsella rubella Carubv10025229m.g I 0.682
Bra012939 Brassica rapa Bra012939 I 0.682
ATERF15 Arabidopsis lyrata fgenesh2_kg.4__1110__AT2G31230.1 I 0.682
Sb04g033105 Sorghum bicolor Sb04g033105 I 0.682
Bostr.24513s0101 Boechera stricta Bostr.24513s0101 I 0.682
Bra021712 Brassica rapa Bra021712 I 0.681
GRMZM2G123119 Zea mays GRMZM2G123119 I 0.681
Sb02g012630 Sorghum bicolor Sb02g012630 I 0.681
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.681
Bo4g176080 Brassica oleracea Bo4g176080 I 0.681
Thhalv10017149m.g Eutrema salsugineum Thhalv10017149m.g I 0.681
ERF107 Arabidopsis thaliana AT5G61590 I 0.680
Thhalv10005285m.g Eutrema salsugineum Thhalv10005285m.g I 0.680
fgenesh2_kg.8__2142__AT5G61590.1 Arabidopsis lyrata fgenesh2_kg.8__2142__AT5G61590.1 I 0.680
Gorai.007G086100 Gossypium raimondii Gorai.007G086100 I 0.680
Carubv10027835m.g Capsella rubella Carubv10027835m.g I 0.680
GRMZM2G381441 Zea mays GRMZM2G381441 I 0.680
Cagra.0542s0054 Capsella grandiflora Cagra.0542s0054 I 0.680
Bostr.26833s0077 Boechera stricta Bostr.26833s0077 I 0.680
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.680
mgf021067m Mimulus guttatus mgf021067m I 0.680
Sb01g000352 Sorghum bicolor Sb01g000352 I 0.680
GLYMA19G34670 Glycine max GLYMA19G34670 I 0.680
Lus10014655.g Linum usitatissimum Lus10014655.g I 0.680
Lus10042995.g Linum usitatissimum Lus10042995.g I 0.679
GLYMA10G04170 Glycine max GLYMA10G04170 I 0.679
mgf021081m Mimulus guttatus mgf021081m I 0.678
orange1.1g030002m.g Citrus sinensis orange1.1g030002m.g I 0.678
GLYMA10G23460 Glycine max GLYMA10G23460 I 0.677
ERF106 Arabidopsis thaliana AT5G07580 D 0.677
TCM_014850 Theobroma cacao TCM_014850 I 0.677
Bo9g175610 Brassica oleracea Bo9g175610 I 0.677
Bostr.13129s0205 Boechera stricta Bostr.13129s0205 I 0.677
Thhalv10014666m.g Eutrema salsugineum Thhalv10014666m.g I 0.677
GLYMA20G16920 Glycine max GLYMA20G16920 I 0.677
Bra028690 Brassica rapa Bra028690 I 0.677
PGSC0003DMG400036566 Solanum tuberosum PGSC0003DMG400036566 I 0.677
Carubv10001989m.g Capsella rubella Carubv10001989m.g I 0.677
scaffold_600764.1 Arabidopsis lyrata scaffold_600764.1 I 0.677
Bra009250 Brassica rapa Bra009250 I 0.677
Cagra.2925s0026 Capsella grandiflora Cagra.2925s0026 I 0.677