ARID3B (Gallus gallus)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSGALG00000001376 T014557_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.785 1.000
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.695 0.895
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.695 0.895
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.695 0.895
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.695 0.895
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.695 0.895
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.695 0.895
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.675 0.488
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.657 0.756
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.644 0.791
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.644 0.791
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.644 0.791
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.644 0.791
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.621 0.686
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.508 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000002095 ARID/BRIGHT 227 313

Links

Other ARID/BRIGHT family TFs
Other Gallus gallus TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.000
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.000
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.000
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.000
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.000
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.000
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.000
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.000
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.000
TRB2 Arabidopsis thaliana AT5G67580 D 0.000
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.000
TRB1 Arabidopsis thaliana AT1G49950 D 0.000
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.000
TRB3 Arabidopsis thaliana AT3G49850 I 0.000
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.000
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.000
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.000
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.000
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.000
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.000
Bo8g104830 Brassica oleracea Bo8g104830 I 0.000
Bo6g116150 Brassica oleracea Bo6g116150 I 0.000
Bo3g184590 Brassica oleracea Bo3g184590 I 0.000
Bo3g096520 Brassica oleracea Bo3g096520 I 0.000
Bo1g081300 Brassica oleracea Bo1g081300 I 0.000
Bo5g023860 Brassica oleracea Bo5g023860 I 0.000
Bo8g067280 Brassica oleracea Bo8g067280 I 0.000
Bo6g018740 Brassica oleracea Bo6g018740 I 0.000
Bo9g019040 Brassica oleracea Bo9g019040 I 0.000
Bra016037 Brassica rapa Bra016037 I 0.000
Bra025967 Brassica rapa Bra025967 I 0.000
Bra029978 Brassica rapa Bra029978 I 0.000
Bra018818 Brassica rapa Bra018818 I 0.000
Bra030894 Brassica rapa Bra030894 I 0.000
Bra030992 Brassica rapa Bra030992 I 0.000
Bra037837 Brassica rapa Bra037837 I 0.000
Bra037839 Brassica rapa Bra037839 I 0.000
Bra016598 Brassica rapa Bra016598 I 0.000
Bra024438 Brassica rapa Bra024438 I 0.000
PK19870.1 Cannabis sativa PK19870.1 I 0.000
PK00568.1 Cannabis sativa PK00568.1 I 0.000
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.000
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.000
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.000
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.000
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.000
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.000
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.000
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.000
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.000
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.000
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.000
Ca_02722 Cicer arietinum Ca_02722 I 0.000
Ca_08043 Cicer arietinum Ca_08043 I 0.000
Ca_10058 Cicer arietinum Ca_10058 I 0.000
Cla012798 Citrullus lanatus Cla012798 I 0.000
Cla006547 Citrullus lanatus Cla006547 I 0.000
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.000
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.000
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.000
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.000
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.000
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.000
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.000
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.000
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.000
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.000
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.000
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.000
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.000
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.000
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.000
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.000
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.000
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.000
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.000
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.000
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.000
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.000
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.000
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.000
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.000
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.000
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.000
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.000
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.000
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.000
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.000
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.000
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.000
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.000
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.000
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.000
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.000
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.000
MDP0000265359 Malus domestica MDP0000265359 I 0.000
MDP0000234807 Malus domestica MDP0000234807 I 0.000
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.000
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.000
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.000
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.000
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.000
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.000
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.000
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.000
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.000
mgf007122m Mimulus guttatus mgf007122m I 0.000
mgf010975m Mimulus guttatus mgf010975m I 0.000
mgf004823m Mimulus guttatus mgf004823m I 0.000
mgf000125m Mimulus guttatus mgf000125m I 0.000
mgf011386m Mimulus guttatus mgf011386m I 0.000
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.000
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.000
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.000
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.000
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.000
OBART01G21150 Oryza barthii OBART01G21150 I 0.000
OBART01G28260 Oryza barthii OBART01G28260 I 0.000
OB01G37330 Oryza brachyantha OB01G37330 I 0.000
OB01G30760 Oryza brachyantha OB01G30760 I 0.000
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.000
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.000
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.000
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.000
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.000
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.000
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.000
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.000
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.000
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.000
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.000
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.000
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.000
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.000
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.000
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.000
OS01G0589300 Oryza sativa OS01G0589300 I 0.000
OS01G0708000 Oryza sativa OS01G0708000 D 0.000
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.000
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.000
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.000
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.000
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.000
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.000
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.000
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.000
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.000
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.000
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.000
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.000
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.000
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.000
Pm021139 Prunus mume Pm021139 I 0.000
Pm013309 Prunus mume Pm013309 I 0.000
Pm027209 Prunus mume Pm027209 I 0.000
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.000
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.000
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.000
29661.m000926 Ricinus communis 29661.m000926 I 0.000
29706.m001328 Ricinus communis 29706.m001328 I 0.000
29912.m005376 Ricinus communis 29912.m005376 I 0.000
29812.m000204 Ricinus communis 29812.m000204 I 0.000
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.000
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.000
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.000
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.000
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.000
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.000
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.000
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.000
Si002467m.g Setaria italica Si002467m.g I 0.000
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.000
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.000
Solyc03g121840.2 Solanum lycopersicum Solyc03g121840.2 N 0.000
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.000
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.000
PGSC0003DMG400002489 Solanum tuberosum PGSC0003DMG400002489 N 0.000
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.000
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.000
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.000
TCM_029078 Theobroma cacao TCM_029078 I 0.000
TCM_000807 Theobroma cacao TCM_000807 I 0.000
TCM_007242 Theobroma cacao TCM_007242 I 0.000
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.000
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.000
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.000
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.000
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.000
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.000
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.000
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.000