CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ARID3B
(
Gallus gallus
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
ENSGALG00000001376
T014557_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid3b
M01659_2.00
Mus musculus
NNDATTAAWWN
NWWTTAATHNN
PBM
Weirauch et al.(2014)
pTH4425
0.785
1.000
ARID3A
M01658_2.00
Microcebus murinus
NDATHAWDN
NHWTDATHN
PBM
Weirauch et al.(2014)
pTH9214
0.695
0.895
Arid3a
M00115_2.00
Mus musculus
NDATHADDN
NHHTDATHN
PBM
Badis et al.(2009)
Arid3a_3875
0.695
0.895
Arid3a
M01660_2.00
Mus musculus
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5169
0.695
0.895
ARID3A
M01662_2.00
Procavia capensis
NNATHDNNN
NNNHDATNN
PBM
Weirauch et al.(2014)
pTH9384
0.695
0.895
Arid3a
M02651_2.00
Mus musculus
ATYAAA
TTTRAT
SELEX
Mathelier et al.(2014)
MA0151.1
0.695
0.895
ARID3A
M09766_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DRI1_01
0.695
0.895
DDB_G0275333
M01656_2.00
Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN
PBM
Weirauch et al.(2014)
pTH5168
0.675
0.488
cfi-1
M01667_2.00
Caenorhabditis elegans
NNATHDNN
NNHDATNN
PBM
Weirauch et al.(2014)
pTH5118
0.657
0.756
retn
M01664_2.00
Drosophila melanogaster
NDATHRNN
NNYDATHN
PBM
Weirauch et al.(2014)
pTH5119
0.644
0.791
retn
M03590_2.00
Drosophila melanogaster
NNATTRATHN
NDATYAATNN
SELEX
Nitta et al.(2015)
retn_1
0.644
0.791
retn
M05899_2.00
Drosophila melanogaster
AATYAAAM
KTTTRATT
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
0.644
0.791
retn
M09768_2.00
Drosophila melanogaster
NNRATTAADN
NHTTAATYNN
Transfac
Matys et al.(2006)
I$DRI_01
0.644
0.791
ACYPI009013
M01655_2.00
Acyrthosiphon pisum
NDATHAADN
NHTTDATHN
PBM
Weirauch et al.(2014)
pTH5117
0.621
0.686
GSPATT00004674001
M01665_2.00
Paramecium tetraurelia
NNATYHNN
NNDRATNN
PBM
Weirauch et al.(2014)
pTH5124
0.508
0.419
TTHERM_00243900
M01666_2.00
Tetrahymena thermophila
NDDATYANN
NNTRATHHN
PBM
Weirauch et al.(2014)
pTH5128
0.508
0.372
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGALP00000002095
ARID/BRIGHT
227
313
ERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE
Links
Other
ARID/BRIGHT
family TFs
Other
Gallus gallus
TFs
364 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00007p00193000
Amborella trichopoda
AMTR_s00007p00193000
I
0.000
AMTR_s00036p00166880
Amborella trichopoda
AMTR_s00036p00166880
I
0.000
Aquca_004_00181
Aquilegia coerulea
Aquca_004_00181
I
0.000
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.000
TRB2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002157
I
0.000
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.000
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.000
TRB3
Arabidopsis lyrata
fgenesh2_kg.5__1337__AT3G49850.1
I
0.000
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.000
TRB2
Arabidopsis thaliana
AT5G67580
D
0.000
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.000
TRB1
Arabidopsis thaliana
AT1G49950
D
0.000
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.000
TRB3
Arabidopsis thaliana
AT3G49850
I
0.000
Bostr.0568s0184
Boechera stricta
Bostr.0568s0184
I
0.000
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.000
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.000
Bostr.6864s0256
Boechera stricta
Bostr.6864s0256
I
0.000
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.000
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.000
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.000
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.000
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.000
Bo3g096520
Brassica oleracea
Bo3g096520
I
0.000
Bo1g081300
Brassica oleracea
Bo1g081300
I
0.000
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.000
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.000
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.000
Bo9g019040
Brassica oleracea
Bo9g019040
I
0.000
Bra016037
Brassica rapa
Bra016037
I
0.000
Bra025967
Brassica rapa
Bra025967
I
0.000
Bra029978
Brassica rapa
Bra029978
I
0.000
Bra018818
Brassica rapa
Bra018818
I
0.000
Bra030894
Brassica rapa
Bra030894
I
0.000
Bra030992
Brassica rapa
Bra030992
I
0.000
Bra037837
Brassica rapa
Bra037837
I
0.000
Bra037839
Brassica rapa
Bra037839
I
0.000
Bra016598
Brassica rapa
Bra016598
I
0.000
Bra024438
Brassica rapa
Bra024438
I
0.000
PK19870.1
Cannabis sativa
PK19870.1
I
0.000
PK00568.1
Cannabis sativa
PK00568.1
I
0.000
Cagra.0342s0046
Capsella grandiflora
Cagra.0342s0046
I
0.000
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.000
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.000
Cagra.4491s0006
Capsella grandiflora
Cagra.4491s0006
I
0.000
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.000
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.000
Carubv10017722m.g
Capsella rubella
Carubv10017722m.g
I
0.000
Carubv10026874m.g
Capsella rubella
Carubv10026874m.g
I
0.000
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.000
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.000
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.000
Ca_02722
Cicer arietinum
Ca_02722
I
0.000
Ca_08043
Cicer arietinum
Ca_08043
I
0.000
Ca_10058
Cicer arietinum
Ca_10058
I
0.000
Cla012798
Citrullus lanatus
Cla012798
I
0.000
Cla006547
Citrullus lanatus
Cla006547
I
0.000
Ciclev10028926m.g
Citrus clementina
Ciclev10028926m.g
I
0.000
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.000
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.000
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.000
orange1.1g022048m.g
Citrus sinensis
orange1.1g022048m.g
I
0.000
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.000
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.000
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.000
Cucsa.298390
Cucumis sativus
Cucsa.298390
I
0.000
Cucsa.341020
Cucumis sativus
Cucsa.341020
I
0.000
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.000
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.000
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.000
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.000
Thhalv10004691m.g
Eutrema salsugineum
Thhalv10004691m.g
I
0.000
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.000
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.000
Thhalv10010562m.g
Eutrema salsugineum
Thhalv10010562m.g
I
0.000
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.000
GLYMA07G00930
Glycine max
GLYMA07G00930
I
0.000
GLYMA08G20270
Glycine max
GLYMA08G20270
I
0.000
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.000
Gorai.005G230800
Gossypium raimondii
Gorai.005G230800
I
0.000
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.000
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.000
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.000
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.000
Lus10011546.g
Linum usitatissimum
Lus10011546.g
I
0.000
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.000
Lus10019260.g
Linum usitatissimum
Lus10019260.g
I
0.000
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.000
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.000
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.000
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.000
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.000
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.000
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.000
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.000
MDP0000265359
Malus domestica
MDP0000265359
I
0.000
MDP0000234807
Malus domestica
MDP0000234807
I
0.000
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.000
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.000
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.000
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.000
cassava37744.valid.m1
Manihot esculenta
cassava37744.valid.m1
I
0.000
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.000
MTR_0095s0040
Medicago truncatula
MTR_0095s0040
I
0.000
MTR_8g494240
Medicago truncatula
MTR_8g494240
I
0.000
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.000
mgf007122m
Mimulus guttatus
mgf007122m
I
0.000
mgf010975m
Mimulus guttatus
mgf010975m
I
0.000
mgf004823m
Mimulus guttatus
mgf004823m
I
0.000
mgf000125m
Mimulus guttatus
mgf000125m
I
0.000
mgf011386m
Mimulus guttatus
mgf011386m
I
0.000
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.000
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.000
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.000
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.000
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.000
OBART01G21150
Oryza barthii
OBART01G21150
I
0.000
OBART01G28260
Oryza barthii
OBART01G28260
I
0.000
OB01G37330
Oryza brachyantha
OB01G37330
I
0.000
OB01G30760
Oryza brachyantha
OB01G30760
I
0.000
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.000
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.000
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.000
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.000
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.000
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.000
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.000
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.000
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.000
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.000
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.000
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.000
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.000
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.000
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.000
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.000
OS01G0589300
Oryza sativa
OS01G0589300
I
0.000
OS01G0708000
Oryza sativa
OS01G0708000
D
0.000
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.000
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.000
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.000
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.000
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.000
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.000
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.000
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.000
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.000
POPTR_0014s01010
Populus trichocarpa
POPTR_0014s01010
I
0.000
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.000
POPTR_0007s14920
Populus trichocarpa
POPTR_0007s14920
I
0.000
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.000
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.000
Pm021139
Prunus mume
Pm021139
I
0.000
Pm013309
Prunus mume
Pm013309
I
0.000
Pm027209
Prunus mume
Pm027209
I
0.000
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.000
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.000
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.000
29661.m000926
Ricinus communis
29661.m000926
I
0.000
29706.m001328
Ricinus communis
29706.m001328
I
0.000
29912.m005376
Ricinus communis
29912.m005376
I
0.000
29812.m000204
Ricinus communis
29812.m000204
I
0.000
SapurV1A.1368s0050
Salix purpurea
SapurV1A.1368s0050
I
0.000
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.000
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.000
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.000
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.000
SapurV1A.0235s0100
Salix purpurea
SapurV1A.0235s0100
I
0.000
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.000
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.000
Si002467m.g
Setaria italica
Si002467m.g
I
0.000
Solyc11g044320.1
Solanum lycopersicum
Solyc11g044320.1
I
0.000
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.000
Solyc03g121840.2
Solanum lycopersicum
Solyc03g121840.2
N
0.000
Solyc02g064630.2
Solanum lycopersicum
Solyc02g064630.2
I
0.000
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.000
PGSC0003DMG400002489
Solanum tuberosum
PGSC0003DMG400002489
N
0.000
PGSC0003DMG402003328
Solanum tuberosum
PGSC0003DMG402003328
I
0.000
PGSC0003DMG400023131
Solanum tuberosum
PGSC0003DMG400023131
I
0.000
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.000
TCM_029078
Theobroma cacao
TCM_029078
I
0.000
TCM_000807
Theobroma cacao
TCM_000807
I
0.000
TCM_007242
Theobroma cacao
TCM_007242
I
0.000
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.000
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.000
VIT_07s0151g00480
Vitis vinifera
VIT_07s0151g00480
I
0.000
TRB1
Vitis vinifera
VIT_03s0091g01030
I
0.000
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.000
VIT_00s1311g00020
Vitis vinifera
VIT_00s1311g00020
I
0.000
GRMZM2G023667
Zea mays
GRMZM2G023667
I
0.000
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.000