CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Arid5a
(
Mus musculus
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
ENSMUSG00000037447
T014644_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables RNA stem-loop binding activity and chromatin binding activity. Involved in cellular response to lipopolysaccharide; positive regulation of T-helper 17 type immune response; and positive regulation of cytokine production. Acts upstream of or within chondrocyte differentiation; positive regulation of histone acetylation; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including ear; heart; hemolymphoid system; nervous system; and neural retina. Orthologous to human ARID5A (AT-rich interaction domain 5A). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid5a
M00116_2.00
Mus musculus
NHAATATTDNN
NNHAATATTDN
PBM
Badis et al.(2009)
Arid5a_3770
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arid5a
M01663_2.00
Rattus norvegicus
NNNRWATHNN
NNDATWYNNN
PBM
Weirauch et al.(2014)
pTH5121
0.785
1.000
arid6
M01657_2.00
Danio rerio
NNRWATYN
NRATWYNN
PBM
Weirauch et al.(2014)
pTH5120
0.649
0.647
Arid5b
M01661_2.00
Mus musculus
NDATWHNN
NNDWATHN
PBM
Weirauch et al.(2014)
pTH4426
0.632
0.753
ARID5B
M08707_2.00
Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C
0.632
0.753
Arid5b
M08708_2.00
Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH
Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C
0.632
0.753
ARID5B
M09767_2.00
Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM
Transfac
Matys et al.(2006)
V$MRF2_01
0.632
0.753
e_gw.4.260.1_CONSTRUCT
M01668_2.00
PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN
PBM
Weirauch et al.(2014)
pTH5122
0.493
0.588
For this family, TFs with SR scores >
0.422
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00116_2.00
ARID/BRIGHT
21
106
EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000095385
ARID/BRIGHT
81
166
EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
ENSMUSP00000110683
ARID/BRIGHT
51
89
EEQAFLVSLYKFMKERHTPIERVPHLGFKQSASLGGGGW
ENSMUSP00000110683
ARID/BRIGHT
164
231
TEPDRLPCLFPSVNLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
ENSMUSP00000110684
ARID/BRIGHT
52
137
EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
ENSMUSP00000115490
ARID/BRIGHT
51
136
EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPY
Links
Other
ARID/BRIGHT
family TFs
Other
Mus musculus
TFs
155 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy