fgenesh2_pg.C_Chr_07000337 (Micromonas sp RCC299)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 fgenesh2_pg.C_Chr_07000337 T016108_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.477 0.380
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.459 0.354
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.442 0.329
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
101593 ARID/BRIGHT 1445 1530

Links

Other ARID/BRIGHT family TFs
Other Micromonas sp RCC299 TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AZW_est_orfs.1_230_4278492:2 Micromonas pusilla AZW_est_orfs.1_230_4278492:2 N 0.584
TTHERM_00243900 Tetrahymena thermophila TTHERM_00243900 D 0.477
Contig1044.0.g66 Oxytricha trifallax Contig1044.0.g66 I 0.459
GSPATT00004674001 Paramecium tetraurelia GSPATT00004674001 D 0.459
NEMVEDRAFT_v1g42971 Nematostella vectensis NEMVEDRAFT_v1g42971 I 0.458
DDB_G0275333 Dictyostelium discoideum DDB_G0275333 D 0.442
BTMF_0000158501 Brugia timori BTMF_0000158501 I 0.431
Bm14781 Brugia malayi Bm14781 I 0.431
EFA85631.1 Polysphondylium pallidum EFA85631.1 I 0.429
LCUP015823 Lucilia cuprina LCUP015823 N 0.428
AFAF010393 Anopheles farauti AFAF010393 N 0.428
AFUN009891 Anopheles funestus AFUN009891 N 0.428
PPAI002183 Phlebotomus papatasi PPAI002183 N 0.428
ASTEI11512 Anopheles stephensi ASTEI11512 N 0.428
AMEM013442 Anopheles merus AMEM013442 N 0.428
GG16758 Drosophila erecta FBgn0108988 N 0.428
osa Drosophila yakuba FBgn0041640 N 0.428
GJ24712 Drosophila virilis FBgn0211788 N 0.428
GM15347 Drosophila sechellia FBgn0170267 N 0.428
GI23637 Drosophila mojavensis FBgn0146363 N 0.428
GH15872 Drosophila grimshawi FBgn0123343 N 0.428
GF23141 Drosophila ananassae FBgn0100135 N 0.428
GK22507 Drosophila willistoni FBgn0224484 N 0.428
KGM_12579 Danaus plexippus KGM_12579 N 0.428
GA26236 Drosophila pseudoobscura FBgn0247610 N 0.428
BGIBMGA010273 Bombyx mori BGIBMGA010273 N 0.428
osa Drosophila melanogaster FBgn0261885 N 0.428
TCNE_0001142701 Toxocara canis TCNE_0001142701 I 0.426