|
HHAL000963-PA
(Halyomorpha halys)
ARID/BRIGHT
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF01388 (ARID) |
IPR001606 |
HHAL000963-PA |
T016205_2.00 |
Misc (2018-Jan-19) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
retn
M01664_2.00 |
Drosophila melanogaster |
NDATHRNN |
NNYDATHN |
PBM
Weirauch et al.(2014)
pTH5119
|
0.682
|
0.924
|
retn
M03590_2.00 |
Drosophila melanogaster |
NNATTRATHN |
NDATYAATNN |
SELEX
Nitta et al.(2015)
retn_1
|
0.682
|
0.924
|
retn
M05899_2.00 |
Drosophila melanogaster |
AATYAAAM |
KTTTRATT |
B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795
|
0.682
|
0.924
|
retn
M09768_2.00 |
Drosophila melanogaster |
NNRATTAADN |
NHTTAATYNN |
Transfac
Matys et al.(2006)
I$DRI_01
|
0.682
|
0.924
|
ACYPI009013
M01655_2.00 |
Acyrthosiphon pisum |
NDATHAADN |
NHTTDATHN |
PBM
Weirauch et al.(2014)
pTH5117
|
0.682
|
0.773
|
cfi-1
M01667_2.00 |
Caenorhabditis elegans |
NNATHDNN |
NNHDATNN |
PBM
Weirauch et al.(2014)
pTH5118
|
0.617
|
0.742
|
ARID3A
M01658_2.00 |
Microcebus murinus |
NDATHAWDN |
NHWTDATHN |
PBM
Weirauch et al.(2014)
pTH9214
|
0.603
|
0.727
|
Arid3a
M00115_2.00 |
Mus musculus |
NDATHADDN |
NHHTDATHN |
PBM
Badis et al.(2009)
Arid3a_3875
|
0.603
|
0.727
|
Arid3a
M01660_2.00 |
Mus musculus |
NDATHAADN |
NHTTDATHN |
PBM
Weirauch et al.(2014)
pTH5169
|
0.603
|
0.727
|
ARID3A
M01662_2.00 |
Procavia capensis |
NNATHDNNN |
NNNHDATNN |
PBM
Weirauch et al.(2014)
pTH9384
|
0.603
|
0.727
|
Arid3a
M02651_2.00 |
Mus musculus |
ATYAAA |
TTTRAT |
SELEX
Mathelier et al.(2014)
MA0151.1
|
0.603
|
0.727
|
ARID3A
M09766_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$DRI1_01
|
0.603
|
0.727
|
DDB_G0275333
M01656_2.00 |
Dictyostelium discoideum |
NNATHDNNNN |
NNNNHDATNN |
PBM
Weirauch et al.(2014)
pTH5168
|
0.567
|
0.485
|
Arid3b
M01659_2.00 |
Mus musculus |
NNDATTAAWWN |
NWWTTAATHNN |
PBM
Weirauch et al.(2014)
pTH4425
|
0.541
|
0.712
|
GSPATT00004674001
M01665_2.00 |
Paramecium tetraurelia |
NNATYHNN |
NNDRATNN |
PBM
Weirauch et al.(2014)
pTH5124
|
0.515
|
0.394
|
TTHERM_00243900
M01666_2.00 |
Tetrahymena thermophila |
NDDATYANN |
NNTRATHHN |
PBM
Weirauch et al.(2014)
pTH5128
|
0.483
|
0.439
|
For this family, TFs with SR scores > 0.422 will likely have a similar motif |