CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Afo_R010305
(
Aptenodytes forsteri
)
ARID/BRIGHT,RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF02257 (RFX_DNA_binding)
IPR001606
IPR003150
Afo_R010305
T016935_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Afo_R010305
ARID/BRIGHT
15
101
KGLAFLDELRQVHHSRGSPFKKIPVVGGKELDLHALYTRVTTLGGFGKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYE
Afo_R010305
RFX
519
601
EKFACQWLNAHFEVNLDCSVSRAEMYSEYLSTCSKLARGGILTSTGFYKCLRTVFPNHTVKRVEDPGNNGQAHIHVVGVKRRA
Links
Other
ARID/BRIGHT,RFX
family TFs
Other
Aptenodytes forsteri
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_52175
Aegilops tauschii
F775_52175
N
0.000
F775_28584
Aegilops tauschii
F775_28584
I
0.000
F775_08647
Aegilops tauschii
F775_08647
I
0.000
F775_00835
Aegilops tauschii
F775_00835
I
0.000
AMTR_s00036p00107460
Amborella trichopoda
AMTR_s00036p00107460
I
0.000
Aquca_034_00423
Aquilegia coerulea
Aquca_034_00423
I
0.000
Aquca_030_00294
Aquilegia coerulea
Aquca_030_00294
I
0.000
MYB26
Arabidopsis lyrata
fgenesh2_kg.3__1496__AT3G13890.1
I
0.000
ATMYB86
Arabidopsis lyrata
fgenesh2_kg.6__2630__AT5G26660.1
I
0.000
MYB55
Arabidopsis lyrata
fgenesh2_kg.6__3543__AT4G01680.1
I
0.000
AtMYB19
Arabidopsis lyrata
fgenesh2_kg.8__1111__AT5G52260.1
I
0.000
AtMYB45
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5001377
I
0.000
AtMYB18
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_7001401
I
0.000
MYB26
Arabidopsis thaliana
AT3G13890
I
0.000
AtMYB45
Arabidopsis thaliana
AT3G48920
I
0.000
MYB55
Arabidopsis thaliana
AT4G01680
D
0.000
LAF1
Arabidopsis thaliana
AT4G25560
I
0.000
MYB86
Arabidopsis thaliana
AT5G26660
I
0.000
AtMYB19
Arabidopsis thaliana
AT5G52260
I
0.000
Bostr.18473s0062
Boechera stricta
Bostr.18473s0062
I
0.000
Bostr.28625s0318
Boechera stricta
Bostr.28625s0318
I
0.000
Bostr.4825s0008
Boechera stricta
Bostr.4825s0008
I
0.000
Bostr.7305s0041
Boechera stricta
Bostr.7305s0041
I
0.000
Bostr.7867s0367
Boechera stricta
Bostr.7867s0367
I
0.000
Bostr.29827s0161
Boechera stricta
Bostr.29827s0161
I
0.000
BRADI5G16672
Brachypodium distachyon
BRADI5G16672
I
0.000
BRADI2G36730
Brachypodium distachyon
BRADI2G36730
I
0.000
BRADI3G49970
Brachypodium distachyon
BRADI3G49970
I
0.000
Bo7g095130
Brassica oleracea
Bo7g095130
I
0.000
Bo1g040300
Brassica oleracea
Bo1g040300
N
0.000
Bo2g156300
Brassica oleracea
Bo2g156300
I
0.000
Bo3g023270
Brassica oleracea
Bo3g023270
I
0.000
Bo7g110400
Brassica oleracea
Bo7g110400
N
0.000
Bo8g077360
Brassica oleracea
Bo8g077360
I
0.000
Bo9g004210
Brassica oleracea
Bo9g004210
I
0.000
Bo9g010860
Brassica oleracea
Bo9g010860
I
0.000
Bra013900
Brassica rapa
Bra013900
N
0.000
Bra036588
Brassica rapa
Bra036588
I
0.000
Bra036317
Brassica rapa
Bra036317
I
0.000
Bra035097
Brassica rapa
Bra035097
I
0.000
Bra019154
Brassica rapa
Bra019154
N
0.000
Bra018027
Brassica rapa
Bra018027
I
0.000
Bra029129
Brassica rapa
Bra029129
I
0.000
PK18276.1
Cannabis sativa
PK18276.1
I
0.000
Cagra.23492s0001
Capsella grandiflora
Cagra.23492s0001
I
0.000
Cagra.2337s0007
Capsella grandiflora
Cagra.2337s0007
I
0.000
Cagra.0736s0026
Capsella grandiflora
Cagra.0736s0026
I
0.000
Cagra.0334s0011
Capsella grandiflora
Cagra.0334s0011
I
0.000
Cagra.0094s0035
Capsella grandiflora
Cagra.0094s0035
I
0.000
Carubv10001224m.g
Capsella rubella
Carubv10001224m.g
I
0.000
Carubv10001308m.g
Capsella rubella
Carubv10001308m.g
I
0.000
Carubv10007732m.g
Capsella rubella
Carubv10007732m.g
I
0.000
Carubv10015767m.g
Capsella rubella
Carubv10015767m.g
I
0.000
Carubv10027541m.g
Capsella rubella
Carubv10027541m.g
I
0.000
Carubv10018592m.g
Capsella rubella
Carubv10018592m.g
I
0.000
evm.TU.supercontig_107.47
Carica papaya
evm.TU.supercontig_107.47
I
0.000
Ca_03589
Cicer arietinum
Ca_03589
I
0.000
Ca_01055
Cicer arietinum
Ca_01055
I
0.000
Ca_19758
Cicer arietinum
Ca_19758
I
0.000
Ca_01072
Cicer arietinum
Ca_01072
I
0.000
Ca_03564
Cicer arietinum
Ca_03564
I
0.000
Cla001724
Citrullus lanatus
Cla001724
I
0.000
Cla006288
Citrullus lanatus
Cla006288
I
0.000
Ciclev10020144m.g
Citrus clementina
Ciclev10020144m.g
I
0.000
Ciclev10006897m.g
Citrus clementina
Ciclev10006897m.g
N
0.000
orange1.1g045400m.g
Citrus sinensis
orange1.1g045400m.g
I
0.000
orange1.1g013300m.g
Citrus sinensis
orange1.1g013300m.g
I
0.000
Cucsa.107740
Cucumis sativus
Cucsa.107740
I
0.000
Cucsa.313950
Cucumis sativus
Cucsa.313950
I
0.000
Cucsa.127860
Cucumis sativus
Cucsa.127860
I
0.000
Eucgr.H01337
Eucalyptus grandis
Eucgr.H01337
I
0.000
Eucgr.A00996
Eucalyptus grandis
Eucgr.A00996
I
0.000
Eucgr.A02796
Eucalyptus grandis
Eucgr.A02796
I
0.000
Eucgr.K00250
Eucalyptus grandis
Eucgr.K00250
I
0.000
Eucgr.K00555
Eucalyptus grandis
Eucgr.K00555
I
0.000
Thhalv10028778m.g
Eutrema salsugineum
Thhalv10028778m.g
I
0.000
Thhalv10026022m.g
Eutrema salsugineum
Thhalv10026022m.g
N
0.000
Thhalv10014388m.g
Eutrema salsugineum
Thhalv10014388m.g
I
0.000
Thhalv10010657m.g
Eutrema salsugineum
Thhalv10010657m.g
I
0.000
Thhalv10004450m.g
Eutrema salsugineum
Thhalv10004450m.g
I
0.000
gene13281-v1.0-hybrid
Fragaria vesca
gene13281-v1.0-hybrid
I
0.000
gene27001-v1.0-hybrid
Fragaria vesca
gene27001-v1.0-hybrid
I
0.000
GLYMA10G38110
Glycine max
GLYMA10G38110
I
0.000
GLYMA10G28250
Glycine max
GLYMA10G28250
I
0.000
GLYMA10G27940
Glycine max
GLYMA10G27940
I
0.000
GLYMA09G25655
Glycine max
GLYMA09G25655
I
0.000
GLYMA03G38660
Glycine max
GLYMA03G38660
I
0.000
GLYMA02G00960
Glycine max
GLYMA02G00960
I
0.000
GLYMA16G31280
Glycine max
GLYMA16G31280
I
0.000
GLYMA19G41010
Glycine max
GLYMA19G41010
I
0.000
GLYMA19G41250
Glycine max
GLYMA19G41250
I
0.000
GLYMA03G38410
Glycine max
GLYMA03G38410
I
0.000
GLYMA20G29710
Glycine max
GLYMA20G29710
I
0.000
GLYMA20G22230
Glycine max
GLYMA20G22230
I
0.000
Gorai.008G277900
Gossypium raimondii
Gorai.008G277900
I
0.000
Gorai.007G118200
Gossypium raimondii
Gorai.007G118200
I
0.000
Gorai.001G148500
Gossypium raimondii
Gorai.001G148500
I
0.000
Gorai.004G147600
Gossypium raimondii
Gorai.004G147600
I
0.000
Gorai.007G011100
Gossypium raimondii
Gorai.007G011100
I
0.000
Gorai.008G133700
Gossypium raimondii
Gorai.008G133700
I
0.000
MLOC_56753
Hordeum vulgare
MLOC_56753
I
0.000
MLOC_59663
Hordeum vulgare
MLOC_59663
I
0.000
MLOC_73614
Hordeum vulgare
MLOC_73614
I
0.000
MLOC_13019
Hordeum vulgare
MLOC_13019
I
0.000
LPERR04G16000
Leersia perrieri
LPERR04G16000
I
0.000
LPERR07G12760
Leersia perrieri
LPERR07G12760
I
0.000
Lus10027458.g
Linum usitatissimum
Lus10027458.g
I
0.000
Lus10038022.g
Linum usitatissimum
Lus10038022.g
I
0.000
Lus10005739.g
Linum usitatissimum
Lus10005739.g
I
0.000
Lus10005740.g
Linum usitatissimum
Lus10005740.g
I
0.000
Lus10039213.g
Linum usitatissimum
Lus10039213.g
I
0.000
chr5.CM0148.380.nc
Lotus japonicus
chr5.CM0148.380.nc
I
0.000
chr5.CM0048.320.nd
Lotus japonicus
chr5.CM0048.320.nd
I
0.000
chr5.CM0048.130.nc
Lotus japonicus
chr5.CM0048.130.nc
I
0.000
chr1.CM0206.990.nd
Lotus japonicus
chr1.CM0206.990.nd
I
0.000
chr1.CM0122.20.nc
Lotus japonicus
chr1.CM0122.20.nc
I
0.000
MDP0000152575
Malus domestica
MDP0000152575
I
0.000
MDP0000896053
Malus domestica
MDP0000896053
I
0.000
cassava21326.m1
Manihot esculenta
cassava21326.m1
I
0.000
cassava33008.m1
Manihot esculenta
cassava33008.m1
I
0.000
cassava26284.m1
Manihot esculenta
cassava26284.m1
I
0.000
MTR_7g111290
Medicago truncatula
MTR_7g111290
I
0.000
MTR_6g055910
Medicago truncatula
MTR_6g055910
I
0.000
MTR_1g085040
Medicago truncatula
MTR_1g085040
I
0.000
MTR_1g100667
Medicago truncatula
MTR_1g100667
I
0.000
MTR_1g085640
Medicago truncatula
MTR_1g085640
I
0.000
MTR_7g110830
Medicago truncatula
MTR_7g110830
I
0.000
mgf024107m
Mimulus guttatus
mgf024107m
I
0.000
mgf024114m
Mimulus guttatus
mgf024114m
I
0.000
GSMUA_Achr8G11340_001
Musa acuminata
GSMUA_Achr8G11340_001
I
0.000
GSMUA_Achr9G11190_001
Musa acuminata
GSMUA_Achr9G11190_001
I
0.000
GSMUA_Achr2G01830_001
Musa acuminata
GSMUA_Achr2G01830_001
I
0.000
GSMUA_Achr1G25120_001
Musa acuminata
GSMUA_Achr1G25120_001
I
0.000
OBART02G25570
Oryza barthii
OBART02G25570
I
0.000
OBART04G19730
Oryza barthii
OBART04G19730
I
0.000
OBART07G15150
Oryza barthii
OBART07G15150
I
0.000
OB02G32950
Oryza brachyantha
OB02G32950
I
0.000
OB04G26810
Oryza brachyantha
OB04G26810
I
0.000
ORGLA04G0168700
Oryza glaberrima
ORGLA04G0168700
I
0.000
ORGLA07G0124200
Oryza glaberrima
ORGLA07G0124200
I
0.000
ORGLA10G0151700
Oryza glaberrima
ORGLA10G0151700
I
0.000
OGLUM02G26100
Oryza glumaepatula
OGLUM02G26100
I
0.000
OGLUM04G19590
Oryza glumaepatula
OGLUM04G19590
I
0.000
BGIOSGA016820
Oryza indica
BGIOSGA016820
I
0.000
BGIOSGA008698
Oryza indica
BGIOSGA008698
I
0.000
BGIOSGA024270
Oryza indica
BGIOSGA024270
I
0.000
OMERI04G16730
Oryza meridionalis
OMERI04G16730
I
0.000
OMERI07G11910
Oryza meridionalis
OMERI07G11910
I
0.000
OMERI02G25080
Oryza meridionalis
OMERI02G25080
I
0.000
ONIVA04G17950
Oryza nivara
ONIVA04G17950
I
0.000
ONIVA02G28010
Oryza nivara
ONIVA02G28010
I
0.000
OPUNC02G23410
Oryza punctata
OPUNC02G23410
I
0.000
OPUNC04G17450
Oryza punctata
OPUNC04G17450
I
0.000
OPUNC07G13970
Oryza punctata
OPUNC07G13970
I
0.000
ORUFI02G26980
Oryza rufipogon
ORUFI02G26980
I
0.000
ORUFI04G21270
Oryza rufipogon
ORUFI04G21270
I
0.000
ORUFI07G15620
Oryza rufipogon
ORUFI07G15620
I
0.000
OS07G0497500
Oryza sativa
OS07G0497500
I
0.000
OS04G0532800
Oryza sativa
OS04G0532800
I
0.000
Pavir.Ab02417
Panicum virgatum
Pavir.Ab02417
I
0.000
Pavir.Ba00923
Panicum virgatum
Pavir.Ba00923
I
0.000
Pavir.Bb02786
Panicum virgatum
Pavir.Bb02786
I
0.000
Pavir.Ga00879
Panicum virgatum
Pavir.Ga00879
I
0.000
Pavir.Gb00734
Panicum virgatum
Pavir.Gb00734
I
0.000
PDK_20s1606731g001
Phoenix dactylifera
PDK_20s1606731g001
I
0.000
e_gw1.211.99.1
Physcomitrella patens
e_gw1.211.99.1
I
0.000
gw1.149.61.1
Physcomitrella patens
gw1.149.61.1
I
0.000
POPTR_0002s18700
Populus trichocarpa
POPTR_0002s18700
I
0.000
POPTR_0012s13260
Populus trichocarpa
POPTR_0012s13260
I
0.000
POPTR_0014s10680
Populus trichocarpa
POPTR_0014s10680
I
0.000
POPTR_0015s13190
Populus trichocarpa
POPTR_0015s13190
I
0.000
Pm019344
Prunus mume
Pm019344
I
0.000
PRUPE_ppa019729mg
Prunus persica
PRUPE_ppa019729mg
I
0.000
SapurV1A.0754s0180
Salix purpurea
SapurV1A.0754s0180
I
0.000
SapurV1A.1077s0040
Salix purpurea
SapurV1A.1077s0040
I
0.000
SapurV1A.3474s0020
Salix purpurea
SapurV1A.3474s0020
I
0.000
SapurV1A.0321s0070
Salix purpurea
SapurV1A.0321s0070
I
0.000
SapurV1A.1253s0100
Salix purpurea
SapurV1A.1253s0100
I
0.000
SELMODRAFT_437219
Selaginella moellendorffii
SELMODRAFT_437219
I
0.000
Si012304m.g
Setaria italica
Si012304m.g
I
0.000
Si017947m.g
Setaria italica
Si017947m.g
I
0.000
Si030152m.g
Setaria italica
Si030152m.g
I
0.000
Solyc01g102340.2
Solanum lycopersicum
Solyc01g102340.2
I
0.000
PGSC0003DMG400018279
Solanum tuberosum
PGSC0003DMG400018279
I
0.000
PGSC0003DMG400014291
Solanum tuberosum
PGSC0003DMG400014291
I
0.000
Sb02g033830
Sorghum bicolor
Sb02g033830
I
0.000
Sb06g023610
Sorghum bicolor
Sb06g023610
I
0.000
Sb04g033680
Sorghum bicolor
Sb04g033680
I
0.000
Sb09g003100
Sorghum bicolor
Sb09g003100
I
0.000
TCM_004965
Theobroma cacao
TCM_004965
I
0.000
TCM_015157
Theobroma cacao
TCM_015157
I
0.000
Traes_1DS_5BAD8947E
Triticum aestivum
Traes_1DS_5BAD8947E
I
0.000
Traes_6DL_A014E9069
Triticum aestivum
Traes_6DL_A014E9069
I
0.000
Traes_2BL_03F3475CD
Triticum aestivum
Traes_2BL_03F3475CD
I
0.000
Traes_2AS_40FA27AE7
Triticum aestivum
Traes_2AS_40FA27AE7
I
0.000
Traes_2BL_604FE7639
Triticum aestivum
Traes_2BL_604FE7639
I
0.000
Traes_2AL_962A9D448
Triticum aestivum
Traes_2AL_962A9D448
I
0.000
Traes_1BS_92EA1F290
Triticum aestivum
Traes_1BS_92EA1F290
I
0.000
Traes_2AL_2D4100475
Triticum aestivum
Traes_2AL_2D4100475
I
0.000
Traes_2BL_35241DE8D
Triticum aestivum
Traes_2BL_35241DE8D
I
0.000
Traes_1AS_1EE692FDC
Triticum aestivum
Traes_1AS_1EE692FDC
I
0.000
Traes_6BL_CE61B9510
Triticum aestivum
Traes_6BL_CE61B9510
I
0.000
Traes_6AL_D10CBA40D
Triticum aestivum
Traes_6AL_D10CBA40D
I
0.000
Traes_2AL_AF9357B4C
Triticum aestivum
Traes_2AL_AF9357B4C
N
0.000
Traes_2BL_7CEC6A8D7
Triticum aestivum
Traes_2BL_7CEC6A8D7
I
0.000
TRIUR3_32691
Triticum urartu
TRIUR3_32691
I
0.000
TRIUR3_26358
Triticum urartu
TRIUR3_26358
I
0.000
TRIUR3_15020
Triticum urartu
TRIUR3_15020
I
0.000
VIT_01s0010g00410
Vitis vinifera
VIT_01s0010g00410
I
0.000
VIT_07s0005g02480
Vitis vinifera
VIT_07s0005g02480
I
0.000
MYB26
Vitis vinifera
VIT_09s0002g01670
I
0.000
GRMZM2G496770
Zea mays
GRMZM2G496770
I
0.000
GRMZM2G170049
Zea mays
GRMZM2G170049
I
0.000
GRMZM2G172327
Zea mays
GRMZM2G172327
I
0.000