CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HCOI01518500
(
Haemonchus contortus
)
ARID/BRIGHT,RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF02257 (RFX_DNA_binding)
IPR001606
IPR003150
HCOI01518500
T016976_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HCOI01518500.t1
ARID/BRIGHT
46
132
KISDFYQSLRQFYKRKWNAPLKLPTVQGVEVNLFRLYDTVMALGGWQKVALHEKWSDVAEMLGVGEDVVGGDHAIKLLYMRYLSKYE
HCOI01518500.t1
RFX
607
670
DQLTEQWIRQNCVLDHSAVTPRGELYAAYVDDLRNQYHSLSGSLAMFSNVMKSIFPELVFKMAE
Links
Other
ARID/BRIGHT,RFX
family TFs
Other
Haemonchus contortus
TFs
9 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HPLM_0001875601
Haemonchus placei
HPLM_0001875601
N
1.000
TELCIR_19453
Teladorsagia circumcincta
TELCIR_19453
N
0.960
ANCCAN_16897
Ancylostoma caninum
ANCCAN_16897
N
0.940
ANCCEY_10921
Ancylostoma ceylanicum
ANCCEY_10921
N
0.919
NBR_0001588701
Nippostrongylus brasiliensis
NBR_0001588701
N
0.919
HPBE_0000100701
Heligmosomoides bakeri
HPBE_0000100701
N
0.907
DICVIV_08156
Dictyocaulus viviparus
DICVIV_08156
N
0.900
ACOC_0000225601
Angiostrongylus costaricensis
ACOC_0000225601
N
0.893
swsn-7
Caenorhabditis elegans
WBGene00007433
N
0.705