CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_kg.1__427__AT1G04880.1
(
Arabidopsis lyrata
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
fgenesh2_kg.1__427__AT1G04880.1
T017023_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB15
M06696_2.00
Arabidopsis thaliana
TWTAWWATAWRGTWTW
WAWACYWTATWWTAWA
Dap-seq
OMalley et al.(2016)
AT1G04880_col_a
0.974
0.974
HMGB15
M06697_2.00
Arabidopsis thaliana
TATAWHATATRGTWT
AWACYATATDWTATA
Dap-seq
OMalley et al.(2016)
AT1G04880_colamp_a
0.974
0.974
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.1__427__AT1G04880.1
ARID/BRIGHT
31
116
DPRLFMSSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFPPTATNASYVLRKYYFSLLNNYE
fgenesh2_kg.1__427__AT1G04880.1
Sox
263
330
PKPNRSGYNFFFAEQHARLKPLHPGKDRDISRIIGELWNKLNEDEKLVYQGKAIEDKERYRTEMEDYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Arabidopsis lyrata
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy