CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0690s0033
(
Capsella grandiflora
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Cagra.0690s0033
T017123_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HMGB10
M06700_2.00
Arabidopsis thaliana
TWATAA
TTATWA
Dap-seq
OMalley et al.(2016)
At3g13350_col_a
0.942
0.942
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0690s0033.1.p
ARID/BRIGHT
41
126
NSALFWEKLRALLGLTSKTLKVPTVGGNSLDLHRLFIEVTSRGGIERVVKDRKWKEVIGAFSFPTTITSASFVLRKYYLKFLYQLE
Cagra.0690s0033.1.p
Sox
237
304
PKCHRSGYNFFFAEQHARLKPEYPGQERNITKKIGHMWSNLTESEKQVYQDKGVKDVERYRMEMSEYK
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Capsella grandiflora
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy