Thhalv10018826m.g (Eutrema salsugineum)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Thhalv10018826m.g T017173_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.954 0.954
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.954 0.954
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10018826m ARID/BRIGHT 41 125
Thhalv10018826m Sox 255 322

Links

Other ARID/BRIGHT,Sox family TFs
Other Eutrema salsugineum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_20285 Aegilops tauschii F775_20285 I 0.000
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I 0.000
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I 0.000
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I 0.000
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.000
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I 0.000
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I 0.000
GPRI1 Arabidopsis thaliana AT2G20570 D 0.000
GLK2 Arabidopsis thaliana AT5G44190 I 0.000
APRR2 Arabidopsis thaliana AT4G18020 D 0.000
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.000
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I 0.000
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I 0.000
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.000
Bo8g102300 Brassica oleracea Bo8g102300 I 0.000
Bo7g003410 Brassica oleracea Bo7g003410 I 0.000
Bo7g067200 Brassica oleracea Bo7g067200 I 0.000
Bra036482 Brassica rapa Bra036482 I 0.000
Bra031129 Brassica rapa Bra031129 I 0.000
Bra033726 Brassica rapa Bra033726 I 0.000
Bra036015 Brassica rapa Bra036015 I 0.000
PK19826.1 Cannabis sativa PK19826.1 I 0.000
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.000
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I 0.000
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.000
Carubv10014114m.g Capsella rubella Carubv10014114m.g I 0.000
Ca_02452 Cicer arietinum Ca_02452 I 0.000
Ca_11268 Cicer arietinum Ca_11268 I 0.000
Cla008926 Citrullus lanatus Cla008926 I 0.000
Cla003791 Citrullus lanatus Cla003791 I 0.000
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I 0.000
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I 0.000
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I 0.000
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I 0.000
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I 0.000
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I 0.000
Cucsa.087530 Cucumis sativus Cucsa.087530 I 0.000
Cucsa.321580 Cucumis sativus Cucsa.321580 I 0.000
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I 0.000
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I 0.000
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I 0.000
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.000
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I 0.000
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I 0.000
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I 0.000
GLYMA12G33430 Glycine max GLYMA12G33430 I 0.000
GLYMA13G37010 Glycine max GLYMA13G37010 I 0.000
GLYMA06G44330 Glycine max GLYMA06G44330 I 0.000
GLYMA12G13430 Glycine max GLYMA12G13430 I 0.000
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I 0.000
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I 0.000
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I 0.000
MLOC_43537 Hordeum vulgare MLOC_43537 I 0.000
MLOC_65876 Hordeum vulgare MLOC_65876 I 0.000
LPERR06G12880 Leersia perrieri LPERR06G12880 I 0.000
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.000
Lus10018649.g Linum usitatissimum Lus10018649.g I 0.000
Lus10033642.g Linum usitatissimum Lus10033642.g I 0.000
Lus10039883.g Linum usitatissimum Lus10039883.g I 0.000
Lus10040109.g Linum usitatissimum Lus10040109.g I 0.000
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I 0.000
MDP0000237396 Malus domestica MDP0000237396 I 0.000
MDP0000225179 Malus domestica MDP0000225179 I 0.000
MDP0000526864 Malus domestica MDP0000526864 I 0.000
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I 0.000
cassava9823.m1 Manihot esculenta cassava9823.m1 I 0.000
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I 0.000
MTR_4g078810 Medicago truncatula MTR_4g078810 I 0.000
MTR_2g090675 Medicago truncatula MTR_2g090675 I 0.000
mgf012846m Mimulus guttatus mgf012846m I 0.000
mgf007181m Mimulus guttatus mgf007181m I 0.000
mgf004257m Mimulus guttatus mgf004257m I 0.000
mgf014879m Mimulus guttatus mgf014879m I 0.000
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.000
GSMUA_Achr6G05850_001 Musa acuminata GSMUA_Achr6G05850_001 I 0.000
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.000
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.000
OBART03G02540 Oryza barthii OBART03G02540 I 0.000
OB06G22250 Oryza brachyantha OB06G22250 I 0.000
OB01G18980 Oryza brachyantha OB01G18980 I 0.000
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I 0.000
ORGLA01G0079000 Oryza glaberrima ORGLA01G0079000 I 0.000
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I 0.000
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.000
BGIOSGA022875 Oryza indica BGIOSGA022875 I 0.000
BGIOSGA002040 Oryza indica BGIOSGA002040 I 0.000
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.000
OMERI06G15340 Oryza meridionalis OMERI06G15340 I 0.000
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.000
ONIVA06G16920 Oryza nivara ONIVA06G16920 I 0.000
OPUNC06G13180 Oryza punctata OPUNC06G13180 I 0.000
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.000
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.000
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I 0.000
GLK1 Oryza sativa OS06G0348800 I 0.000
GLK2 Oryza sativa OS01G0239000 I 0.000
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I 0.000
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I 0.000
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I 0.000
Pavir.J11422 Panicum virgatum Pavir.J11422 I 0.000
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I 0.000
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I 0.000
estExt_gwp_gw1.C_310256 Physcomitrella patens estExt_gwp_gw1.C_310256 I 0.000
fgenesh1_pm.scaffold_311000005 Physcomitrella patens fgenesh1_pm.scaffold_311000005 I 0.000
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I 0.000
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I 0.000
Pm014123 Prunus mume Pm014123 I 0.000
Pm014733 Prunus mume Pm014733 I 0.000
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I 0.000
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I 0.000
29983.m003131 Ricinus communis 29983.m003131 I 0.000
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I 0.000
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I 0.000
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I 0.000
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I 0.000
Si001336m.g Setaria italica Si001336m.g I 0.000
Si006400m.g Setaria italica Si006400m.g I 0.000
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I 0.000
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I 0.000
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I 0.000
Sb10g008400 Sorghum bicolor Sb10g008400 I 0.000
Sb03g000400 Sorghum bicolor Sb03g000400 I 0.000
TCM_015780 Theobroma cacao TCM_015780 I 0.000
TCM_008193 Theobroma cacao TCM_008193 I 0.000
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I 0.000
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I 0.000
TRIUR3_15856 Triticum urartu TRIUR3_15856 I 0.000
GPRI1 Vitis vinifera VIT_12s0028g03100 I 0.000
GRMZM2G087804 Zea mays GRMZM2G087804 I 0.000
GRMZM2G026833 Zea mays GRMZM2G026833 I 0.000