PK27175.1 (Cannabis sativa)
ARID/BRIGHT,Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
PK27175.1 T017177_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HMGB9
M06698_2.00
Arabidopsis thaliana
WWHAWTTAATN

NATTAAWTDWW
Dap-seq
OMalley et al.(2016)
At1g76110_col_a
0.828 0.828
HMGB9
M06699_2.00
Arabidopsis thaliana
ATTWAWNATTWAATD

HATTWAATNWTWAAT
Dap-seq
OMalley et al.(2016)
At1g76110_colamp_a
0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK27175.1 ARID/BRIGHT 44 127
PK27175.1 Sox 254 321

Links

Other ARID/BRIGHT,Sox family TFs
Other Cannabis sativa TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.000
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.000
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.000
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.000
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.000
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.000
RKD3 Arabidopsis thaliana AT5G66990 N 0.000
RKD2 Arabidopsis thaliana AT1G74480 D 0.000
RKD1 Arabidopsis thaliana AT1G18790 I 0.000
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.000
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.000
Bo8g068090 Brassica oleracea Bo8g068090 I 0.000
Bo7g064180 Brassica oleracea Bo7g064180 I 0.000
Bra012122 Brassica rapa Bra012122 I 0.000
Bra015907 Brassica rapa Bra015907 I 0.000
Bra008153 Brassica rapa Bra008153 I 0.000
Bra016542 Brassica rapa Bra016542 I 0.000
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.000
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N 0.000
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.000
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.000
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.000
Carubv10027579m.g Capsella rubella Carubv10027579m.g N 0.000
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.000
Ca_13151 Cicer arietinum Ca_13151 I 0.000
Ca_27191 Cicer arietinum Ca_27191 I 0.000
Cla019404 Citrullus lanatus Cla019404 I 0.000
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.000
Genemark1.7281_g Coccomyxa subellipsoidea C169 Genemark1.7281_g I 0.000
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.000
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.000
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.000
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.000
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.000
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.000
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.000
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.000
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.000
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.000
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.000
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.000
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.000
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.000
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.000
MDP0000266172 Malus domestica MDP0000266172 I 0.000
MDP0000261199 Malus domestica MDP0000261199 I 0.000
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.000
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.000
mgf022310m Mimulus guttatus mgf022310m I 0.000
mg020279m Mimulus guttatus mg020279m I 0.000
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.000
Pavir.Eb01347 Panicum virgatum Pavir.Eb01347 N 0.000
Pavir.Ea01492 Panicum virgatum Pavir.Ea01492 N 0.000
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N 0.000
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.000
Pm024905 Prunus mume Pm024905 I 0.000
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.000
30138.m004071 Ricinus communis 30138.m004071 I 0.000
TCM_014009 Theobroma cacao TCM_014009 I 0.000
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.000
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.000