CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MBD8
(
Arabidopsis thaliana
)
AT hook,MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02178 (AT_hook)
PF01429 (MBD)
IPR017956
IPR001739
AT1G22310
T018301_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G22310.1
AT hook
82
94
KRKRGRPRKIRNP
AT1G22310.1
AT hook
139
151
KRKRGRPPKNKEE
AT1G22310.1
MBD
241
310
YGGYLPRGWRLMLYIKRKGSNLLLACRRYISPDGQQFETCKEVSTYLRSLLESPSKNQHYYLQSDNKTLG
AT1G22310.2
AT hook
181
193
KRKRGRPRKIRNP
AT1G22310.2
AT hook
238
250
KRKRGRPPKNKEE
AT1G22310.2
MBD
340
409
YGGYLPRGWRLMLYIKRKGSNLLLACRRYISPDGQQFETCKEVSTYLRSLLESPSKNQHYYLQSDNKTLG
Links
Other
AT hook,MBD
family TFs
Other
Arabidopsis thaliana
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MBD8
Arabidopsis lyrata
fgenesh2_kg.1__2425__AT1G22310.2
N
0.859
Cagra.0114s0069
Capsella grandiflora
Cagra.0114s0069
N
0.765