Bra025779 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra025779 T018895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ARF2
M06714_2.00
Arabidopsis thaliana
NHTGTCKSHD

HDSMGACADN
Dap-seq
OMalley et al.(2016)
ARF2_col_v31
0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025779.1-P B3 94 151

Links

Other B3 family TFs
Other Brassica rapa TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
nAv.1.0.1.g08227 Acanthocheilonema viteae nAv.1.0.1.g08227 N 0.000
ACRE_011600 Acremonium chrysogenum ACRE_011600 I 0.000
AAEL002381 Aedes aegypti AAEL002381 N 0.000
AAEL011414 Aedes aegypti AAEL011414 N 0.000
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I 0.000
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I 0.000
ANCCAN_04253 Ancylostoma caninum ANCCAN_04253 N 0.000
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I 0.000
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.000
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I 0.000
ANCCEY_04224 Ancylostoma ceylanicum ANCCEY_04224 N 0.000
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.000
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.000
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N 0.000
ANCDUO_12352 Ancylostoma duodenale ANCDUO_12352 N 0.000
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I 0.000
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.000
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I 0.000
ACAC_0000817201 Angiostrongylus cantonensis ACAC_0000817201 N 0.000
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.000
ACOC_0000235301 Angiostrongylus costaricensis ACOC_0000235301 N 0.000
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.000
ASIM_0001178701 Anisakis simplex ASIM_0001178701 N 0.000
AALB010797 Anopheles albimanus AALB010797 N 0.000
AARA003413 Anopheles arabiensis AARA003413 N 0.000
ACHR003270 Anopheles christyi ACHR003270 N 0.000
ACOM026236 Anopheles coluzzii ACOM026236 N 0.000
ADAC005122 Anopheles darlingi ADAC005122 N 0.000
ADIR000495 Anopheles dirus ADIR000495 N 0.000
AEPI002535 Anopheles epiroticus AEPI002535 N 0.000
AFUN009599 Anopheles funestus AFUN009599 N 0.000
AGAP012334 Anopheles gambiae AGAP012334 N 0.000
AMAM007083 Anopheles maculatus AMAM007083 N 0.000
AMEC017787 Anopheles melas AMEC017787 N 0.000
AQUA002990 Anopheles quadriannulatus AQUA002990 N 0.000
ASU_05994 Ascaris suum ASU_05994 N 0.000
ACEP16595 Atta cephalotes ACEP16595 I 0.000
M437DRAFT_52225 Aureobasidium melanogenum M437DRAFT_52225 N 0.000
M438DRAFT_395502 Aureobasidium pullulans M438DRAFT_395502 N 0.000
BGIBMGA007393 Bombyx mori BGIBMGA007393 N 0.000
BGIBMGA005289 Bombyx mori BGIBMGA005289 I 0.000
Bm8632 Brugia malayi Bm8632 N 0.000
BXY_1081900 Bursaphelenchus xylophilus BXY_1081900 I 0.000
BXY_1081800 Bursaphelenchus xylophilus BXY_1081800 I 0.000
CBN25379 Caenorhabditis brenneri CBN25379 I 0.000
CBG04066 Caenorhabditis briggsae CBG04066 N 0.000
CBG09136 Caenorhabditis briggsae CBG09136 N 0.000
hmg-4 Caenorhabditis elegans WBGene00001974 N 0.000
hmg-1.1 Caenorhabditis elegans WBGene00001971 N 0.000
CJA04355 Caenorhabditis japonica CJA04355 N 0.000
CJA19030 Caenorhabditis japonica CJA19030 N 0.000
CRE11852 Caenorhabditis remanei CRE11852 N 0.000
CRE03995 Caenorhabditis remanei CRE03995 N 0.000
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.000
CapteG172235 Capitella teleta CapteG172235 I 0.000
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.000
CLEC003860 Cimex lectularius CLEC003860 I 0.000
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.000
csin108029 Clonorchis sinensis csin108029 N 0.000
CFIO01_13531 Colletotrichum fioriniae CFIO01_13531 I 0.000
CGGC5_9539 Colletotrichum gloeosporioides CGGC5_9539 I 0.000
GLRG_01394 Colletotrichum graminicola GLRG_01394 I 0.000
CH063_04081 Colletotrichum higginsianum CH063_04081 I 0.000
CSUB01_00364 Colletotrichum sublineola CSUB01_00364 I 0.000
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.000
CpipJ_CPIJ002952 Culex pipiens CpipJ_CPIJ002952 N 0.000
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.000
CPIJ002952 Culex quinquefasciatus CPIJ002952 N 0.000
KGM_13852 Danaus plexippus KGM_13852 I 0.000
ssrp1a Danio rerio ENSDARG00000037397 I 0.000
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.000
DICVIV_05502 Dictyocaulus viviparus DICVIV_05502 N 0.000
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.000
nDi.2.2.2.g08508 Dirofilaria immitis nDi.2.2.2.g08508 N 0.000
DME_0000779601 Dracunculus medinensis DME_0000779601 N 0.000
GF13265 Drosophila ananassae FBgn0090297 N 0.000
GF11622 Drosophila ananassae FBgn0088662 I 0.000
GF12460 Drosophila ananassae FBgn0089497 N 0.000
GG19998 Drosophila erecta FBgn0112197 N 0.000
GG22136 Drosophila erecta FBgn0114310 N 0.000
GG20749 Drosophila erecta FBgn0112936 I 0.000
GH21151 Drosophila grimshawi FBgn0128613 N 0.000
GH20784 Drosophila grimshawi FBgn0128247 I 0.000
GH21124 Drosophila grimshawi FBgn0128586 N 0.000
Ssrp Drosophila melanogaster FBgn0010278 N 0.000
HmgZ Drosophila melanogaster FBgn0010228 I 0.000
HmgD Drosophila melanogaster FBgn0004362 N 0.000
GI18750 Drosophila mojavensis FBgn0141489 N 0.000
GI18728 Drosophila mojavensis FBgn0141467 N 0.000
GI20867 Drosophila mojavensis FBgn0143601 I 0.000
GL17523 Drosophila persimilis FBgn0155126 I 0.000
GL11071 Drosophila persimilis FBgn0148681 N 0.000
GL16947 Drosophila persimilis FBgn0154551 N 0.000
GA14726 Drosophila pseudoobscura FBgn0074753 I 0.000
GA30453 Drosophila pseudoobscura FBgn0264590 N 0.000
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.000
GM13209 Drosophila sechellia FBgn0168140 N 0.000
GM15692 Drosophila sechellia FBgn0170608 I 0.000
GM15859 Drosophila sechellia FBgn0170775 N 0.000
GD25013 Drosophila simulans FBgn0196325 N 0.000
GD11622 Drosophila simulans FBgn0183362 N 0.000
GD25171 Drosophila simulans FBgn0196483 I 0.000
GJ21774 Drosophila virilis FBgn0208892 N 0.000
GJ20604 Drosophila virilis FBgn0207743 I 0.000
GJ21748 Drosophila virilis FBgn0208866 N 0.000
GK15924 Drosophila willistoni FBgn0217926 N 0.000
GK15658 Drosophila willistoni FBgn0217663 I 0.000
HmgD Drosophila yakuba FBgn0068146 N 0.000
GE11532 Drosophila yakuba FBgn0229332 N 0.000
HmgZ Drosophila yakuba FBgn0068145 I 0.000
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N 0.000
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N 0.000
ETH_00031100 Eimeria tenella ETH_00031100 I 0.000
EDI_049480 Entamoeba dispar EDI_049480 N 0.000
FFUJ_02729 Fusarium fujikuroi FFUJ_02729 I 0.000
FPSE_02664 Fusarium pseudograminearum FPSE_02664 I 0.000
GGTG_01518 Gaeumannomyces graminis GGTG_01518 I 0.000
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.000
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.000
HCOI01550200 Haemonchus contortus HCOI01550200 N 0.000
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.000
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.000
HPLM_0001324601 Haemonchus placei HPLM_0001324601 N 0.000
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.000
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.000
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.000
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N 0.000
HDID_0000239001 Hymenolepis diminuta HDID_0000239001 N 0.000
HmN_000028000 Hymenolepis microstoma HmN_000028000 N 0.000
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.000
nLs.2.1.2.g04082 Litomosoides sigmodontis nLs.2.1.2.g04082 N 0.000
LOAG_08062 Loa loa LOAG_08062 N 0.000
LCUP016801 Lucilia cuprina LCUP016801 N 0.000
MGG_01641 Magnaporthe oryzae MGG_01641 I 0.000
MAPG_06737 Magnaporthe poae MAPG_06737 I 0.000
MCINX001064 Melitaea cinxia MCINX001064 I 0.000
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.000
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.000
Minc04648 Meloidogyne incognita Minc04648 N 0.000
Minc03634 Meloidogyne incognita Minc03634 N 0.000
MANI_030028 Metarhizium anisopliae MANI_030028 I 0.000
MBR_01483 Metarhizium brunneum MBR_01483 I 0.000
MGU_02157 Metarhizium guizhouense MGU_02157 I 0.000
MAJ_04030 Metarhizium majus MAJ_04030 I 0.000
X797_001988 Metarhizium robertsii X797_001988 I 0.000
ML09221a Mnemiopsis leidyi ML09221a N 0.000
MDOA007633 Musca domestica MDOA007633 N 0.000
MDOA014797 Musca domestica MDOA014797 I 0.000
MDOA009531 Musca domestica MDOA009531 N 0.000
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.000
NECAME_16525 Necator americanus NECAME_16525 N 0.000
NECAME_17981 Necator americanus NECAME_17981 N 0.000
NECAME_17555 Necator americanus NECAME_17555 N 0.000
NECAME_10840 Necator americanus NECAME_10840 N 0.000
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N 0.000
NCU02819 Neurospora crassa NCU02819 D 0.000
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.000
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.000
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.000
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.000
NBR_0001277401 Nippostrongylus brasiliensis NBR_0001277401 N 0.000
OESDEN_09619 Oesophagostomum dentatum OESDEN_09619 N 0.000
nOo.2.0.1.g04693 Onchocerca ochengi nOo.2.0.1.g04693 N 0.000
WBGene00238628 Onchocerca volvulus WBGene00238628 N 0.000
OCS_01486 Ophiocordyceps sinensis OCS_01486 I 0.000
T265_15460 Opisthorchis viverrini T265_15460 N 0.000
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.000
ENSOGAG00000026034 Otolemur garnettii ENSOGAG00000026034 I 0.000
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N 0.000
PTRK_0000111400 Parastrongyloides trichosuri PTRK_0000111400 N 0.000
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.000
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I 0.000
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.000
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N 0.000
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N 0.000
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.000
PPA06513 Pristionchus pacificus PPA06513 N 0.000
Ppa-hmg-1.1 Pristionchus pacificus PPA22767 N 0.000
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N 0.000
RSKR_0000733200 Rhabditophanes kr3021 RSKR_0000733200 N 0.000
RSKR_0000746900 Rhabditophanes kr3021 RSKR_0000746900 N 0.000
SSLN_0000125101 Schistocephalus solidus SSLN_0000125101 N 0.000
SCUD_0000070901 Schistosoma curassoni SCUD_0000070901 N 0.000
A_01848 Schistosoma haematobium A_01848 N 0.000
Sjc_0035580 Schistosoma japonicum Sjc_0035580 N 0.000
Smp_148930 Schistosoma mansoni Smp_148930 N 0.000
SMTD_0001155301 Schistosoma mattheei SMTD_0001155301 N 0.000
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.000
S40288_09735 Stachybotrys chartarum S40288_09735 I 0.000
L596_g16476 Steinernema carpocapsae L596_g16476 N 0.000
L596_g28088 Steinernema carpocapsae L596_g28088 N 0.000
L889_g29516 Steinernema feltiae L889_g29516 N 0.000
L889_g9094 Steinernema feltiae L889_g9094 N 0.000
L893_g29974 Steinernema glaseri L893_g29974 N 0.000
L898_g4830 Steinernema monticolum L898_g4830 N 0.000
L892_g19058 Steinernema scapterisci L892_g19058 N 0.000
L892_g23618 Steinernema scapterisci L892_g23618 N 0.000
SPAL_0001421900 Strongyloides papillosus SPAL_0001421900 N 0.000
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N 0.000
SSTP_0000790100 Strongyloides stercoralis SSTP_0000790100 N 0.000
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N 0.000
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N 0.000
SVE_0536900 Strongyloides venezuelensis SVE_0536900 N 0.000
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.000
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N 0.000
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.000
SMUV_0000499601 Syphacia muris SMUV_0000499601 N 0.000
TASK_0000475801 Taenia asiatica TASK_0000475801 N 0.000
TsM_000111500 Taenia solium TsM_000111500 N 0.000
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.000
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.000
TELCIR_02603 Teladorsagia circumcincta TELCIR_02603 N 0.000
THITE_2121767 Thielavia terrestris THITE_2121767 I 0.000
VHEMI10573 Torrubiella hemipterigena VHEMI10573 I 0.000
TCNE_0001025901 Toxocara canis TCNE_0001025901 N 0.000
VDBG_04589 Verticillium albo atrum VDBG_04589 I 0.000
VDBG_04589 Verticillium alfalfae VDBG_04589 I 0.000
VDAG_09161 Verticillium dahliae VDAG_09161 I 0.000
VDAG_04140 Verticillium dahliae VDAG_04140 I 0.000
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.000