chr2.CM0262.200.nc (Lotus japonicus)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 chr2.CM0262.200.nc T024387_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
VRN1
M06704_2.00
Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN

NAMAAAAAAAAAAAAAAAAAAAAAAAWWW
Dap-seq
OMalley et al.(2016)
VRN1_col_a
0.700 0.700
VRN1
M06705_2.00
Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB

VMMAAAAAAAAAAAANVWN
Dap-seq
OMalley et al.(2016)
VRN1_colamp_a
0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0262.200.nc B3 5 98
chr2.CM0262.200.nc B3 302 397

Links

Other B3 family TFs
Other Lotus japonicus TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29851.m002498 Ricinus communis 29851.m002498 I 0.721
Bo1g115980 Brassica oleracea Bo1g115980 I 0.700
Bostr.19424s0762 Boechera stricta Bostr.19424s0762 I 0.704
Cagra.5105s0003 Capsella grandiflora Cagra.5105s0003 I 0.704
Carubv10015637m.g Capsella rubella Carubv10015637m.g I 0.704
cassava29880.valid.m1 Manihot esculenta cassava29880.valid.m1 I 0.726
Ca_13671 Cicer arietinum Ca_13671 N 0.747
Ca_14825 Cicer arietinum Ca_14825 N 0.847
chr2.CM0308.470.nd Lotus japonicus chr2.CM0308.470.nd I 0.947
chr3.LjT23H01.130.nc Lotus japonicus chr3.LjT23H01.130.nc N 0.757
gene31955-v1.0-hybrid Fragaria vesca gene31955-v1.0-hybrid I 0.732
GLYMA07G21160 Glycine max GLYMA07G21160 I 0.879
GLYMA11G13210 Glycine max GLYMA11G13210 N 0.753
GLYMA12G05250 Glycine max GLYMA12G05250 N 0.757
GLYMA20G01130 Glycine max GLYMA20G01130 N 0.889
Gorai.002G006500 Gossypium raimondii Gorai.002G006500 I 0.718
Gorai.005G240900 Gossypium raimondii Gorai.005G240900 I 0.737
Gorai.012G150900 Gossypium raimondii Gorai.012G150900 I 0.730
Gorai.013G040000 Gossypium raimondii Gorai.013G040000 I 0.711
MDP0000238744 Malus domestica MDP0000238744 N 0.737
MDP0000555456 Malus domestica MDP0000555456 N 0.732
MTR_1g034210 Medicago truncatula MTR_1g034210 N 0.745
MTR_1g034240 Medicago truncatula MTR_1g034240 N 0.841
MTR_4g068320 Medicago truncatula MTR_4g068320 N 0.704
PK10791.1 Cannabis sativa PK10791.1 I 0.751
Pm021537 Prunus mume Pm021537 N 0.775
POPTR_0004s15400 Populus trichocarpa POPTR_0004s15400 I 0.711
POPTR_0009s11170 Populus trichocarpa POPTR_0009s11170 I 0.709
PRUPE_ppa006275mg Prunus persica PRUPE_ppa006275mg I 0.779
SapurV1A.0979s0040 Salix purpurea SapurV1A.0979s0040 I 0.704
SapurV1A.2089s0010 Salix purpurea SapurV1A.2089s0010 I 0.705
TCM_006971 Theobroma cacao TCM_006971 I 0.761
VRN1 Arabidopsis lyrata fgenesh2_kg.3__2116__AT3G18990.1 I 0.704
VRN1 Arabidopsis thaliana AT3G18990 D 0.704