Bra003405 (Brassica rapa)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 Bra003405 T024541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.865 0.865
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003405.1-P BBR 3 138

Links

Other BBR family TFs
Other Brassica rapa TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BPC6 Arabidopsis thaliana AT5G42520 D 0.865
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.872
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.865
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.865
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.744
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.752
30170.m014145 Ricinus communis 30170.m014145 I 0.729
Pm006246 Prunus mume Pm006246 I 0.789
Cla022781 Citrullus lanatus Cla022781 I 0.752
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.797
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.767
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.759
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.774
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.789
PK03443.1 Cannabis sativa PK03443.1 I 0.789
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.857
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.759
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.774
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.767
MDP0000933138 Malus domestica MDP0000933138 I 0.789
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.714
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.729
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 0.752
TCM_034171 Theobroma cacao TCM_034171 I 0.774
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.744
Bo8g095020 Brassica oleracea Bo8g095020 I 0.820
Bra007518 Brassica rapa Bra007518 I 0.812
Bra014504 Brassica rapa Bra014504 I 0.842
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 0.774
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.782
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.752
Bo6g076850 Brassica oleracea Bo6g076850 I 0.887
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.789
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 0.767
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.767
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.752
mgf000855m Mimulus guttatus mgf000855m N 0.707
GSMUA_Achr5G03330_001 Musa acuminata GSMUA_Achr5G03330_001 N 0.707
GSMUA_Achr4G24910_001 Musa acuminata GSMUA_Achr4G24910_001 N 0.714
Pavir.Db02349 Panicum virgatum Pavir.Db02349 N 0.707
Ca_10756 Cicer arietinum Ca_10756 N 0.752
LPERR06G01660 Leersia perrieri LPERR06G01660 N 0.714
ORUFI06G01870 Oryza rufipogon ORUFI06G01870 N 0.707
mgf005948m Mimulus guttatus mgf005948m N 0.767
OPUNC06G01720 Oryza punctata OPUNC06G01720 N 0.707
ONIVA06G02210 Oryza nivara ONIVA06G02210 N 0.707
OMERI06G01780 Oryza meridionalis OMERI06G01780 N 0.707
OLONG_020703 Oryza longistaminata OLONG_020703 N 0.707
ORGLA06G0019100 Oryza glaberrima ORGLA06G0019100 N 0.707
OBART06G01840 Oryza barthii OBART06G01840 N 0.707
OB06G11850 Oryza brachyantha OB06G11850 N 0.707
OGLUM06G01860 Oryza glumaepatula OGLUM06G01860 N 0.707