CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BPC6
(
Arabidopsis thaliana
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF06217 (GAGA_bind)
IPR010409
AT5G42520
T024522_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT5G42520.1
BBR
1
342
MDDGGHRENGRHKAAVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHDYTDEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK
AT5G42520.2
BBR
1
338
MDDGGHRENGRHKAAVQGQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHDYTDEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK
AT5G42520.3
BBR
1
282
MAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVKHLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHDYTDEDSSKHILIGSKSDWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK
Links
Other
BBR
family TFs
Other
Arabidopsis thaliana
TFs
42 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ocbimv22014894m.g
Octopus bimaculoides
Ocbimv22014894m.g
I
1.000
BPC6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8000489
I
0.965
Bostr.3148s0250
Boechera stricta
Bostr.3148s0250
I
0.960
Cagra.9562s0001
Capsella grandiflora
Cagra.9562s0001
I
0.956
Thhalv10006075m.g
Eutrema salsugineum
Thhalv10006075m.g
I
0.945
Carubv10026720m.g
Capsella rubella
Carubv10026720m.g
I
0.930
Bra003405
Brassica rapa
Bra003405
I
0.865
Bo6g076850
Brassica oleracea
Bo6g076850
I
0.853
Bra014504
Brassica rapa
Bra014504
I
0.790
GLYMA04G02860
Glycine max
GLYMA04G02860
I
0.781
VIT_18s0001g13730
Vitis vinifera
VIT_18s0001g13730
I
0.770
SapurV1A.0762s0100
Salix purpurea
SapurV1A.0762s0100
I
0.770
POPTR_0005s25720
Populus trichocarpa
POPTR_0005s25720
I
0.770
POPTR_0002s02820
Populus trichocarpa
POPTR_0002s02820
I
0.770
chr1.CM0195.10.nd
Lotus japonicus
chr1.CM0195.10.nd
I
0.765
GLYMA06G02880
Glycine max
GLYMA06G02880
I
0.762
SapurV1A.0025s0690
Salix purpurea
SapurV1A.0025s0690
I
0.762
Bra007518
Brassica rapa
Bra007518
I
0.755
Ciclev10001400m.g
Citrus clementina
Ciclev10001400m.g
I
0.755
Lus10012389.g
Linum usitatissimum
Lus10012389.g
I
0.754
orange1.1g018368m.g
Citrus sinensis
orange1.1g018368m.g
I
0.751
30170.m014145
Ricinus communis
30170.m014145
I
0.751
Lus10024313.g
Linum usitatissimum
Lus10024313.g
I
0.746
Bo8g095020
Brassica oleracea
Bo8g095020
I
0.745
gene08483-v1.0-hybrid
Fragaria vesca
gene08483-v1.0-hybrid
I
0.739
cassava22532.valid.m1
Manihot esculenta
cassava22532.valid.m1
I
0.739
PGSC0003DMG400003719
Solanum tuberosum
PGSC0003DMG400003719
I
0.736
Pm006246
Prunus mume
Pm006246
I
0.734
Bo4g105160
Brassica oleracea
Bo4g105160
I
0.733
Cucsa.159750
Cucumis sativus
Cucsa.159750
I
0.733
TCM_034171
Theobroma cacao
TCM_034171
I
0.732
Solyc04g081170.2
Solanum lycopersicum
Solyc04g081170.2
I
0.729
PRUPE_ppa008316mg
Prunus persica
PRUPE_ppa008316mg
I
0.728
PK03443.1
Cannabis sativa
PK03443.1
I
0.726
MDP0000933138
Malus domestica
MDP0000933138
I
0.716
Gorai.002G124900
Gossypium raimondii
Gorai.002G124900
I
0.716
MTR_1g023660
Medicago truncatula
MTR_1g023660
I
0.711
Cla022781
Citrullus lanatus
Cla022781
I
0.711
Eucgr.D01054
Eucalyptus grandis
Eucgr.D01054
I
0.710
MDP0000947167
Malus domestica
MDP0000947167
I
0.709
scaffold_200704.1
Arabidopsis lyrata
scaffold_200704.1
I
0.709