BPC6 (Arabidopsis thaliana)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 AT5G42520 T024522_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the BASIC PENTACYSTEINE (BPC) proteins. BPC proteins are plant-specific transcription factors present throughout land plants. BPC transcription factor family is integral for a wide range of processes that support normal growth and development.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG

CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G42520.1 BBR 1 342
AT5G42520.2 BBR 1 338
AT5G42520.3 BBR 1 282

Links

Other BBR family TFs
Other Arabidopsis thaliana TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 0.965
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.960
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.956
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.945
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.930
Bra003405 Brassica rapa Bra003405 I 0.865
Bo6g076850 Brassica oleracea Bo6g076850 I 0.853
Bra014504 Brassica rapa Bra014504 I 0.790
GLYMA04G02860 Glycine max GLYMA04G02860 I 0.781
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.770
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.770
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 0.770
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.770
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.765
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.762
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.762
Bra007518 Brassica rapa Bra007518 I 0.755
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.755
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.754
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.751
30170.m014145 Ricinus communis 30170.m014145 I 0.751
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.746
Bo8g095020 Brassica oleracea Bo8g095020 I 0.745
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.739
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.739
PGSC0003DMG400003719 Solanum tuberosum PGSC0003DMG400003719 I 0.736
Pm006246 Prunus mume Pm006246 I 0.734
Bo4g105160 Brassica oleracea Bo4g105160 I 0.733
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.733
TCM_034171 Theobroma cacao TCM_034171 I 0.732
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.729
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.728
PK03443.1 Cannabis sativa PK03443.1 I 0.726
MDP0000933138 Malus domestica MDP0000933138 I 0.716
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 0.716
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.711
Cla022781 Citrullus lanatus Cla022781 I 0.711
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.710
MDP0000947167 Malus domestica MDP0000947167 I 0.709
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I 0.709