CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.159750
(
Cucumis sativus
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
Cucsa.159750
T024801_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPC6
M06719_2.00
Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM
Dap-seq
OMalley et al.(2016)
BPC6_col_a
0.733
0.733
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.159750.1
BBR
1
338
MDDSGHRENGRHKPDQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSINNNLSCPPGCQIARGVKHIHHPQQQHTHHVPHMNENNYNSREMLASNDPCPTSPVASESTKARRNKRPKEGKTVPTPNKKVSKGPRKVKREAEDLNKIMLGKSQEWKDGIGIMSAGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK
Cucsa.159750.2
BBR
1
338
MDDSGHRENGRHKPDQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSINNNLSCPPGCQIARGVKHIHHPQQQHTHHVPHMNENNYNSREMLASNDPCPTSPVASESTKARRNKRPKEGKTVPTPNKKVSKGPRKVKREAEDLNKIMLGKSQEWKDGIGIMSAGDDLNKQLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARLGGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK
Links
Other
BBR
family TFs
Other
Cucumis sativus
TFs
38 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ocbimv22014894m.g
Octopus bimaculoides
Ocbimv22014894m.g
I
1.000
Cla022781
Citrullus lanatus
Cla022781
I
0.944
POPTR_0002s02820
Populus trichocarpa
POPTR_0002s02820
I
0.819
GLYMA04G02860
Glycine max
GLYMA04G02860
I
0.814
VIT_18s0001g13730
Vitis vinifera
VIT_18s0001g13730
I
0.811
SapurV1A.0762s0100
Salix purpurea
SapurV1A.0762s0100
I
0.807
PRUPE_ppa008316mg
Prunus persica
PRUPE_ppa008316mg
I
0.800
POPTR_0005s25720
Populus trichocarpa
POPTR_0005s25720
I
0.800
30170.m014145
Ricinus communis
30170.m014145
I
0.796
SapurV1A.0025s0690
Salix purpurea
SapurV1A.0025s0690
I
0.796
GLYMA06G02880
Glycine max
GLYMA06G02880
I
0.793
MDP0000933138
Malus domestica
MDP0000933138
I
0.789
gene08483-v1.0-hybrid
Fragaria vesca
gene08483-v1.0-hybrid
I
0.785
Pm006246
Prunus mume
Pm006246
I
0.781
cassava22532.valid.m1
Manihot esculenta
cassava22532.valid.m1
I
0.781
PGSC0003DMG400003719
Solanum tuberosum
PGSC0003DMG400003719
I
0.781
TCM_034171
Theobroma cacao
TCM_034171
I
0.778
Lus10012389.g
Linum usitatissimum
Lus10012389.g
I
0.778
MDP0000947167
Malus domestica
MDP0000947167
I
0.772
Solyc04g081170.2
Solanum lycopersicum
Solyc04g081170.2
I
0.770
chr1.CM0195.10.nd
Lotus japonicus
chr1.CM0195.10.nd
I
0.767
orange1.1g018368m.g
Citrus sinensis
orange1.1g018368m.g
I
0.767
Lus10024313.g
Linum usitatissimum
Lus10024313.g
I
0.767
Eucgr.D01054
Eucalyptus grandis
Eucgr.D01054
I
0.767
Ciclev10001400m.g
Citrus clementina
Ciclev10001400m.g
I
0.767
Gorai.002G124900
Gossypium raimondii
Gorai.002G124900
I
0.765
PK03443.1
Cannabis sativa
PK03443.1
I
0.763
Cagra.9562s0001
Capsella grandiflora
Cagra.9562s0001
I
0.748
Bra003405
Brassica rapa
Bra003405
I
0.744
Thhalv10006075m.g
Eutrema salsugineum
Thhalv10006075m.g
I
0.744
Bostr.3148s0250
Boechera stricta
Bostr.3148s0250
I
0.744
MTR_1g023660
Medicago truncatula
MTR_1g023660
I
0.744
Carubv10026720m.g
Capsella rubella
Carubv10026720m.g
I
0.737
BPC6
Arabidopsis thaliana
AT5G42520
D
0.733
Bo6g076850
Brassica oleracea
Bo6g076850
I
0.715
mgf000855m
Mimulus guttatus
mgf000855m
N
0.711
BPC6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8000489
I
0.700