POPTR_0012s05580 (Populus trichocarpa)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 POPTR_0012s05580 T027370_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s05580.1 BED ZF 57 99

Links

Other BED ZF family TFs
Other Populus trichocarpa TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00024p00250640 Amborella trichopoda AMTR_s00024p00250640 N 0.907
Aquca_002_01079 Aquilegia coerulea Aquca_002_01079 N 0.837
AT1G18560 Arabidopsis thaliana AT1G18560 N 0.884
Bostr.7128s0463 Boechera stricta Bostr.7128s0463 N 0.884
Bo8g104310 Brassica oleracea Bo8g104310 N 0.791
Bo5g083750 Brassica oleracea Bo5g083750 N 0.791
PK14806.1 Cannabis sativa PK14806.1 N 1.000
Cagra.0909s0036 Capsella grandiflora Cagra.0909s0036 N 0.884
Carubv10008481m.g Capsella rubella Carubv10008481m.g N 0.884
Ciclev10019100m.g Citrus clementina Ciclev10019100m.g N 0.977
orange1.1g008805m.g Citrus sinensis orange1.1g008805m.g N 0.977
Cucsa.090680 Cucumis sativus Cucsa.090680 N 0.977
Eucgr.B00689 Eucalyptus grandis Eucgr.B00689 N 0.884
Thhalv10006990m.g Eutrema salsugineum Thhalv10006990m.g N 0.884
gene26197-v1.0-hybrid Fragaria vesca gene26197-v1.0-hybrid N 0.953
GLYMA17G13141 Glycine max GLYMA17G13141 N 0.930
GLYMA05G07875 Glycine max GLYMA05G07875 N 0.930
Gorai.007G008000 Gossypium raimondii Gorai.007G008000 N 0.953
LjSGA_062426.1 Lotus japonicus LjSGA_062426.1 N 0.930
MDP0000155004 Malus domestica MDP0000155004 N 0.953
MDP0000637083 Malus domestica MDP0000637083 N 0.977
cassava37500.valid.m1 Manihot esculenta cassava37500.valid.m1 N 0.977
cassava37499.valid.m1 Manihot esculenta cassava37499.valid.m1 N 0.977
cassava37498.valid.m1 Manihot esculenta cassava37498.valid.m1 N 0.977
OB01G10840 Oryza brachyantha OB01G10840 N 0.721
ORGLA01G0007300 Oryza glaberrima ORGLA01G0007300 N 0.721
BGIOSGA002631 Oryza indica BGIOSGA002631 N 0.721
OS01G0111400 Oryza sativa OS01G0111400 N 0.721
Pavir.Eb00818 Panicum virgatum Pavir.Eb00818 N 0.721
Pavir.Ea00771 Panicum virgatum Pavir.Ea00771 N 0.721
PDK_20s1489551g002 Phoenix dactylifera PDK_20s1489551g002 N 0.930
Pm030213 Prunus mume Pm030213 N 0.977
PRUPE_ppa002398mg Prunus persica PRUPE_ppa002398mg N 0.977
SapurV1A.3382s0020 Salix purpurea SapurV1A.3382s0020 N 1.000
SapurV1A.0851s0040 Salix purpurea SapurV1A.0851s0040 N 1.000
Si000514m.g Setaria italica Si000514m.g N 0.721
Solyc03g119830.2 Solanum lycopersicum Solyc03g119830.2 N 0.907
PGSC0003DMG400005619 Solanum tuberosum PGSC0003DMG400005619 N 0.907
Sb03g008300 Sorghum bicolor Sb03g008300 N 0.721
TCM_012243 Theobroma cacao TCM_012243 N 0.953
VIT_17s0000g04250 Vitis vinifera VIT_17s0000g04250 N 1.000