Pavir.Eb01402 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Eb01402 T028471_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb01402.1.p BED ZF 540 591

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N 0.727
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N 0.773
PK27100.1 Cannabis sativa PK27100.1 N 0.727
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N 0.727
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N 0.727
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N 0.727
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N 0.727
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N 0.727
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N 0.727
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N 0.773
GLYMA13G22881 Glycine max GLYMA13G22881 N 0.727
GLYMA13G22855 Glycine max GLYMA13G22855 N 0.727
GLYMA17G11981 Glycine max GLYMA17G11981 N 0.727
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N 0.773
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N 0.705
MLOC_66012 Hordeum vulgare MLOC_66012 N 0.773
MLOC_75540 Hordeum vulgare MLOC_75540 N 0.750
MDP0000394762 Malus domestica MDP0000394762 N 0.705
cassava11655.m1 Manihot esculenta cassava11655.m1 N 0.727
mgf025287m Mimulus guttatus mgf025287m N 0.727
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N 0.773
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N 0.773
OB08G27840 Oryza brachyantha OB08G27840 N 0.750
OB08G27850 Oryza brachyantha OB08G27850 N 0.773
Pavir.J31170 Panicum virgatum Pavir.J31170 N 0.773
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N 0.727
Pavir.J05554 Panicum virgatum Pavir.J05554 N 0.750
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N 0.932
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N 0.773
Pavir.Eb00995 Panicum virgatum Pavir.Eb00995 N 0.773
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N 0.750
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N 0.727
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N 0.727
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N 0.705
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N 0.750
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N 0.727
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N 0.727
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N 0.705
Si000761m.g Setaria italica Si000761m.g N 0.955
Si034159m.g Setaria italica Si034159m.g N 0.750
Si000431m.g Setaria italica Si000431m.g N 0.773
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N 0.705
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N 0.705
Sb09g016200 Sorghum bicolor Sb09g016200 N 0.864
Sb02g043380 Sorghum bicolor Sb02g043380 N 0.750
Sb01g009090 Sorghum bicolor Sb01g009090 N 0.750
TCM_027266 Theobroma cacao TCM_027266 N 0.773
TCM_038144 Theobroma cacao TCM_038144 N 0.705
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N 0.750
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N 0.773
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N 0.750
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N 0.773
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N 0.773
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N 0.750
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N 0.750
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N 0.705