ATNIG1 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Al_scaffold_0008_132 T030458_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BHLH28
M06742_2.00
Arabidopsis thaliana
NNNYGTACGGAH

DTCCGTACRNNN
Dap-seq
OMalley et al.(2016)
bHLH28_col_a
0.914 0.959
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0008_132 bHLH 335 383

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BHLH28 Arabidopsis thaliana AT5G46830 D 0.914
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I 0.856
evm.TU.supercontig_141.19 Carica papaya evm.TU.supercontig_141.19 I 0.844
Eucgr.E00019 Eucalyptus grandis Eucgr.E00019 I 0.844
Eucgr.B00713 Eucalyptus grandis Eucgr.B00713 I 0.856
Ciclev10019749m.g Citrus clementina Ciclev10019749m.g I 0.844
Carubv10028430m.g Capsella rubella Carubv10028430m.g I 0.894
Carubv10001082m.g Capsella rubella Carubv10001082m.g I 0.844
Cagra.4923s0009 Capsella grandiflora Cagra.4923s0009 I 0.844
Cagra.0751s0016 Capsella grandiflora Cagra.0751s0016 I 0.894
Bostr.7365s0026 Boechera stricta Bostr.7365s0026 I 0.844
Bostr.28243s0053 Boechera stricta Bostr.28243s0053 I 0.856
Aquca_037_00261 Aquilegia coerulea Aquca_037_00261 I 0.844
mgf001993m Mimulus guttatus mgf001993m I 0.844
cassava32651.m1 Manihot esculenta cassava32651.m1 I 0.844
gene18651-v1.0-hybrid Fragaria vesca gene18651-v1.0-hybrid I 0.844
Gorai.001G151700 Gossypium raimondii Gorai.001G151700 I 0.844
SapurV1A.0003s0670 Salix purpurea SapurV1A.0003s0670 I 0.844
orange1.1g046178m.g Citrus sinensis orange1.1g046178m.g I 0.844
MDP0000900024 Malus domestica MDP0000900024 I 0.844
MDP0000859492 Malus domestica MDP0000859492 I 0.844
MDP0000729514 Malus domestica MDP0000729514 I 0.844
MDP0000710285 Malus domestica MDP0000710285 I 0.856
MDP0000442310 Malus domestica MDP0000442310 I 0.856
MDP0000242554 Malus domestica MDP0000242554 I 0.844
MDP0000224302 Malus domestica MDP0000224302 I 0.844
MDP0000183948 Malus domestica MDP0000183948 I 0.856
MDP0000137325 Malus domestica MDP0000137325 I 0.856
Gorai.008G128800 Gossypium raimondii Gorai.008G128800 I 0.844
Gorai.007G111800 Gossypium raimondii Gorai.007G111800 I 0.844
Gorai.004G149500 Gossypium raimondii Gorai.004G149500 I 0.844
cassava29800.valid.m1 Manihot esculenta cassava29800.valid.m1 I 0.844
27964.m000356 Ricinus communis 27964.m000356 I 0.844
27964.m000352 Ricinus communis 27964.m000352 I 0.844
PRUPE_ppa022165mg Prunus persica PRUPE_ppa022165mg I 0.856
PRUPE_ppa016220mg Prunus persica PRUPE_ppa016220mg I 0.856
PRUPE_ppa015634mg Prunus persica PRUPE_ppa015634mg I 0.845
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I 0.856
PRUPE_ppa004680mg Prunus persica PRUPE_ppa004680mg I 0.844
POPTR_0002s17750 Populus trichocarpa POPTR_0002s17750 I 0.844
PGSC0003DMG400018332 Solanum tuberosum PGSC0003DMG400018332 I 0.844
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I 0.856
OB07G15330 Oryza brachyantha OB07G15330 I 0.849
MTR_8g024790 Medicago truncatula MTR_8g024790 I 0.856
MTR_8g024770 Medicago truncatula MTR_8g024770 I 0.856
GSMUA_Achr1G18910_001 Musa acuminata GSMUA_Achr1G18910_001 I 0.844
GLYMA16G02320 Glycine max GLYMA16G02320 I 0.844
PRUPE_ppa022201mg Prunus persica PRUPE_ppa022201mg I 0.856
PRUPE_ppa025417mg Prunus persica PRUPE_ppa025417mg I 0.856
PRUPE_ppa027182mg Prunus persica PRUPE_ppa027182mg I 0.856
Pm029399 Prunus mume Pm029399 I 0.856
Pm028607 Prunus mume Pm028607 I 0.856
Pm028606 Prunus mume Pm028606 I 0.856
Pm028605 Prunus mume Pm028605 I 0.856
Pm028604 Prunus mume Pm028604 I 0.856
Pm023738 Prunus mume Pm023738 I 0.856
Pm023735 Prunus mume Pm023735 I 0.856
Ca_17603 Cicer arietinum Ca_17603 I 0.843
VIT_15s0048g02820 Vitis vinifera VIT_15s0048g02820 I 0.844
VIT_02s0025g02610 Vitis vinifera VIT_02s0025g02610 I 0.844
TCM_005064 Theobroma cacao TCM_005064 I 0.844
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I 0.856
Solyc01g096370.2 Solanum lycopersicum Solyc01g096370.2 I 0.844
GLYMA07G05740 Glycine max GLYMA07G05740 I 0.844