PIL1 (Arabidopsis thaliana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT2G46970 T030638_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion. PIF3 function as a transcriptional activator can be functionally and mechanistically separated from its role in repression of PhyB mediated processes.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.843 0.680
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.843 0.680
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.843 0.680
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.843 0.680
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.843 0.680
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.843 0.680
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM

KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.839 0.520
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G46970.1 bHLH 230 279
AT2G46970.2 bHLH 199 248
AT2G46970.3 bHLH 208 257

Links

Other bHLH family TFs
Other Arabidopsis thaliana TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bostr.25993s0069 Boechera stricta Bostr.25993s0069 I 0.914
Cagra.0050s0002 Capsella grandiflora Cagra.0050s0002 I 0.914
PIL1 Arabidopsis lyrata scaffold_403670.1 N 0.903
Carubv10023299m.g Capsella rubella Carubv10023299m.g N 0.884
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I 0.863
POPTR_0014s10700 Populus trichocarpa POPTR_0014s10700 I 0.863
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I 0.863
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I 0.863
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I 0.863
Eucgr.A00998 Eucalyptus grandis Eucgr.A00998 I 0.862
cassava12867.valid.m1 Manihot esculenta cassava12867.valid.m1 I 0.843
Pm003265 Prunus mume Pm003265 I 0.843
Pm024836 Prunus mume Pm024836 I 0.843
30128.m008988 Ricinus communis 30128.m008988 I 0.843
30138.m004021 Ricinus communis 30138.m004021 I 0.843
cassava17680.valid.m1 Manihot esculenta cassava17680.valid.m1 I 0.843
cassava17681.valid.m1 Manihot esculenta cassava17681.valid.m1 I 0.843
estExt_fgenesh1_pg.C_680048 Physcomitrella patens estExt_fgenesh1_pg.C_680048 I 0.843
estExt_fgenesh1_pg.C_690022 Physcomitrella patens estExt_fgenesh1_pg.C_690022 I 0.843
e_gw1.84.236.1 Physcomitrella patens e_gw1.84.236.1 I 0.843
Cucsa.113040 Cucumis sativus Cucsa.113040 I 0.843
Cucsa.090320 Cucumis sativus Cucsa.090320 I 0.843
cassava46185.m1 Manihot esculenta cassava46185.m1 I 0.843
Ca_03591 Cicer arietinum Ca_03591 I 0.843
Solyc01g102300.2 Solanum lycopersicum Solyc01g102300.2 I 0.843
AMTR_s00045p00141060 Amborella trichopoda AMTR_s00045p00141060 I 0.843
TCM_014141 Theobroma cacao TCM_014141 I 0.843
Si035334m.g Setaria italica Si035334m.g I 0.843
Si021472m.g Setaria italica Si021472m.g I 0.843
SELMODRAFT_118904 Selaginella moellendorffii SELMODRAFT_118904 I 0.843
Si000698m.g Setaria italica Si000698m.g I 0.843
TCM_026851 Theobroma cacao TCM_026851 I 0.843
Traes_1AL_914726769 Triticum aestivum Traes_1AL_914726769 I 0.843
gw1.147.92.1 Physcomitrella patens gw1.147.92.1 I 0.843
Cla018863 Citrullus lanatus Cla018863 I 0.843
PIF7 Vitis vinifera VIT_17s0000g06930 I 0.843
PIF3 Vitis vinifera VIT_14s0060g00260 I 0.843
Traes_1BS_D1FCBFBE8 Triticum aestivum Traes_1BS_D1FCBFBE8 I 0.843
Traes_1DS_55E91A134 Triticum aestivum Traes_1DS_55E91A134 I 0.843
Cla020302 Citrullus lanatus Cla020302 I 0.843
Bostr.25494s0011 Boechera stricta Bostr.25494s0011 I 0.843
Pavir.Ca01237 Panicum virgatum Pavir.Ca01237 I 0.843
Pavir.Ea01048 Panicum virgatum Pavir.Ea01048 I 0.843
Pavir.Ia02188 Panicum virgatum Pavir.Ia02188 I 0.843
orange1.1g006040m.g Citrus sinensis orange1.1g006040m.g I 0.843
MDP0000290263 Malus domestica MDP0000290263 I 0.843
Lus10029805.g Linum usitatissimum Lus10029805.g I 0.843
MDP0000288670 Malus domestica MDP0000288670 I 0.843
Pavir.J18019 Panicum virgatum Pavir.J18019 I 0.843
SapurV1A.0442s0220 Salix purpurea SapurV1A.0442s0220 I 0.843
chr5.CM0048.80.nd Lotus japonicus chr5.CM0048.80.nd I 0.843
PDK_20s1486002g002 Phoenix dactylifera PDK_20s1486002g002 I 0.843
PK15531.1 Cannabis sativa PK15531.1 I 0.843
PK05451.1 Cannabis sativa PK05451.1 D 0.843
SapurV1A.1016s0050 Salix purpurea SapurV1A.1016s0050 I 0.843
Thhalv10007343m.g Eutrema salsugineum Thhalv10007343m.g I 0.843
Lus10020727.g Linum usitatissimum Lus10020727.g I 0.843
Gorai.007G309400 Gossypium raimondii Gorai.007G309400 I 0.843
SELMODRAFT_116654 Selaginella moellendorffii SELMODRAFT_116654 I 0.843
Cagra.4395s0138 Capsella grandiflora Cagra.4395s0138 I 0.843
PDK_20s1775531g001 Phoenix dactylifera PDK_20s1775531g001 I 0.843
PDK_20s1306831g002 Phoenix dactylifera PDK_20s1306831g002 I 0.843
mgf017958m Mimulus guttatus mgf017958m I 0.843
Aquca_003_00259 Aquilegia coerulea Aquca_003_00259 I 0.843
Carubv10008815m.g Capsella rubella Carubv10008815m.g I 0.843
Ciclev10027890m.g Citrus clementina Ciclev10027890m.g I 0.843
Gorai.001G078500 Gossypium raimondii Gorai.001G078500 I 0.843
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I 0.843
gene26073-v1.0-hybrid Fragaria vesca gene26073-v1.0-hybrid I 0.843
gene22963-v1.0-hybrid Fragaria vesca gene22963-v1.0-hybrid I 0.843
Eucgr.B01825 Eucalyptus grandis Eucgr.B01825 I 0.843
evm.TU.supercontig_1213.3 Carica papaya evm.TU.supercontig_1213.3 I 0.843
mgf009653m Mimulus guttatus mgf009653m I 0.843
TCM_004959 Theobroma cacao TCM_004959 I 0.843
GSMUA_Achr5G18390_001 Musa acuminata GSMUA_Achr5G18390_001 I 0.843
LPERR01G10950 Leersia perrieri LPERR01G10950 I 0.843
SELMODRAFT_114141 Selaginella moellendorffii SELMODRAFT_114141 I 0.843
GRMZM2G387528 Zea mays GRMZM2G387528 I 0.843
GRMZM2G115960 Zea mays GRMZM2G115960 I 0.843
GLYMA19G41261 Glycine max GLYMA19G41261 I 0.843
GLYMA20G22291 Glycine max GLYMA20G22291 I 0.843
LPERR10G14070 Leersia perrieri LPERR10G14070 I 0.843
MLOC_68598 Hordeum vulgare MLOC_68598 I 0.843
OBART01G11950 Oryza barthii OBART01G11950 I 0.843
OBART10G18190 Oryza barthii OBART10G18190 I 0.843
OGLUM01G13370 Oryza glumaepatula OGLUM01G13370 I 0.843
OB10G25310 Oryza brachyantha OB10G25310 I 0.843
OB05G12600 Oryza brachyantha OB05G12600 I 0.843
MTR_1g084980 Medicago truncatula MTR_1g084980 I 0.843
OB01G21830 Oryza brachyantha OB01G21830 I 0.843
GLYMA14G03600 Glycine max GLYMA14G03600 I 0.843
GLYMA10G28290 Glycine max GLYMA10G28290 I 0.843
BGIOSGA031426 Oryza indica BGIOSGA031426 I 0.843
Bo5g009910 Brassica oleracea Bo5g009910 I 0.843
Bo8g111120 Brassica oleracea Bo8g111120 I 0.843
BGIOSGA019157 Oryza indica BGIOSGA019157 I 0.843
BGIOSGA001870 Oryza indica BGIOSGA001870 I 0.843
AMTR_s00106p00127480 Amborella trichopoda AMTR_s00106p00127480 I 0.843
PIF3 Arabidopsis thaliana AT1G09530 D 0.843
Bra020017 Brassica rapa Bra020017 I 0.843
Bra031668 Brassica rapa Bra031668 I 0.843
GLYMA03G38675 Glycine max GLYMA03G38675 I 0.843
GLYMA06G21495 Glycine max GLYMA06G21495 I 0.843
GLYMA02G45150 Glycine max GLYMA02G45150 I 0.843
PIF3 Arabidopsis lyrata fgenesh2_kg.1__1002__AT1G09530.2 I 0.843
BRADI2G11100 Brachypodium distachyon BRADI2G11100 I 0.843
BRADI3G33170 Brachypodium distachyon BRADI3G33170 I 0.843
OGLUM05G02640 Oryza glumaepatula OGLUM05G02640 I 0.843
LPERR05G02370 Leersia perrieri LPERR05G02370 I 0.843
POPTR_0005s00360 Populus trichocarpa POPTR_0005s00360 I 0.843
OS01G0286100 Oryza sativa OS01G0286100 I 0.843
PRUPE_ppa022963mg Prunus persica PRUPE_ppa022963mg I 0.843
Sb09g003090 Sorghum bicolor Sb09g003090 I 0.843
ORGLA10G0133200 Oryza glaberrima ORGLA10G0133200 I 0.843
APG Oryza sativa OS05G0139100 I 0.843
OS10G0556200 Oryza sativa OS10G0556200 I 0.843
POPTR_0013s00310 Populus trichocarpa POPTR_0013s00310 I 0.843
PRUPE_ppa001899mg Prunus persica PRUPE_ppa001899mg I 0.843
OMERI05G02570 Oryza meridionalis OMERI05G02570 I 0.843
PGSC0003DMG400018280 Solanum tuberosum PGSC0003DMG400018280 I 0.843
ORGLA08G0194500 Oryza glaberrima ORGLA08G0194500 I 0.843
ORUFI05G02750 Oryza rufipogon ORUFI05G02750 I 0.843
OPUNC01G11630 Oryza punctata OPUNC01G11630 I 0.843
ONIVA05G02540 Oryza nivara ONIVA05G02540 I 0.843
OPUNC05G02500 Oryza punctata OPUNC05G02500 I 0.843
OPUNC10G16560 Oryza punctata OPUNC10G16560 I 0.843
ONIVA01G14150 Oryza nivara ONIVA01G14150 I 0.843
30076.m004542 Ricinus communis 30076.m004542 I 0.841
Bra000560 Brassica rapa Bra000560 I 0.839
UNE10 Arabidopsis lyrata scaffold_604304.1 I 0.839
Bra037312 Brassica rapa Bra037312 I 0.839
TCM_005607 Theobroma cacao TCM_005607 I 0.839
MDP0000439540 Malus domestica MDP0000439540 I 0.839
AMTR_s00110p00030150 Amborella trichopoda AMTR_s00110p00030150 I 0.839
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I 0.839
Solyc03g115540.1 Solanum lycopersicum Solyc03g115540.1 I 0.839
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I 0.839
Bo3g042120 Brassica oleracea Bo3g042120 I 0.839
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I 0.839
PK20816.1 Cannabis sativa PK20816.1 I 0.839
SELMODRAFT_39143 Selaginella moellendorffii SELMODRAFT_39143 I 0.839
UNE10 Arabidopsis thaliana AT4G00050 D 0.839
Bo3g054850 Brassica oleracea Bo3g054850 I 0.839
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I 0.839
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I 0.839
SELMODRAFT_29179 Selaginella moellendorffii SELMODRAFT_29179 I 0.839
Bra000283 Brassica rapa Bra000283 I 0.839
PGSC0003DMG400024554 Solanum tuberosum PGSC0003DMG400024554 I 0.839
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I 0.839
GSMUA_Achr8G11070_001 Musa acuminata GSMUA_Achr8G11070_001 I 0.839
Carubv10001567m.g Capsella rubella Carubv10001567m.g I 0.839
Ca_22883 Cicer arietinum Ca_22883 I 0.839
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I 0.839
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I 0.839
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I 0.839
30174.m008814 Ricinus communis 30174.m008814 I 0.839
mgf005431m Mimulus guttatus mgf005431m I 0.839
MTR_7g111320 Medicago truncatula MTR_7g111320 I 0.839
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I 0.839
UNE10 Vitis vinifera VIT_15s0021g02690 I 0.839
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I 0.839
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I 0.839
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.839
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I 0.839
GLYMA03G04000 Glycine max GLYMA03G04000 I 0.839
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I 0.839
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I 0.839
GLYMA11G17120 Glycine max GLYMA11G17120 I 0.839
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I 0.839
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I 0.839
GLYMA01G15930 Glycine max GLYMA01G15930 I 0.839