BIM3 (Arabidopsis thaliana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT5G38860 T030698_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes BES1-INTERACTING MYC-LIKE 3 (BIM3), a PAR1 (PHYTOCHROME RAPIDLY REGULATED 1)-interacting protein that positively modulates the shade avoidance syndrome in Arabidopsis seedlings.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BIM3
M01711_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8591
(Direct) (Direct)
BIM3
M06741_2.00
Arabidopsis thaliana
DYGTSHNNVKCACGTGMY

RKCACGTGMBNNDSACRH
Dap-seq
OMalley et al.(2016)
BIM3_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.838 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01711_2.00 bHLH 34 86

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G38860.1 bHLH 34 86
AT5G38860.2 bHLH 34 86

Links

Other bHLH family TFs
Other Arabidopsis thaliana TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava30062.valid.m1 Manihot esculenta cassava30062.valid.m1 N 0.000
Ciclev10018916m.g Citrus clementina Ciclev10018916m.g N 0.000
Cla005738 Citrullus lanatus Cla005738 N 0.000
Cucsa.320850 Cucumis sativus Cucsa.320850 N 0.000
evm.TU.supercontig_29.139 Carica papaya evm.TU.supercontig_29.139 N 0.000
gene31749-v1.0-hybrid Fragaria vesca gene31749-v1.0-hybrid N 0.000
Gorai.003G170700 Gossypium raimondii Gorai.003G170700 N 0.000
Gorai.004G200600 Gossypium raimondii Gorai.004G200600 N 0.000
Gorai.008G238300 Gossypium raimondii Gorai.008G238300 N 0.000
Lus10004353.g Linum usitatissimum Lus10004353.g N 0.000
Lus10028934.g Linum usitatissimum Lus10028934.g N 0.000
MDP0000275704 Malus domestica MDP0000275704 N 0.000
orange1.1g042460m.g Citrus sinensis orange1.1g042460m.g N 0.000
PK22905.1 Cannabis sativa PK22905.1 N 0.000
Pm023512 Prunus mume Pm023512 N 0.000
POPTR_0001s00480 Populus trichocarpa POPTR_0001s00480 N 0.000
POPTR_0003s11020 Populus trichocarpa POPTR_0003s11020 N 0.000
PRUPE_ppa001561mg Prunus persica PRUPE_ppa001561mg N 0.000
SapurV1A.0324s0040 Salix purpurea SapurV1A.0324s0040 N 0.000
SapurV1A.0325s0140 Salix purpurea SapurV1A.0325s0140 N 0.000
TCM_015991 Theobroma cacao TCM_015991 N 0.000
VIT_02s0154g00400 Vitis vinifera VIT_02s0154g00400 N 0.000