Bra004678 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra004678 T031367_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G42280
M06733_2.00
Arabidopsis thaliana
DNCMACTTGYH

DRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH130_col_a
0.879 0.980
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH

DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.856 0.922
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN

NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.856 0.922
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004678.1-P bHLH 253 303

Links

Other bHLH family TFs
Other Brassica rapa TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BXY_1091200 Bursaphelenchus xylophilus BXY_1091200 I 0.000
BXY_1189000 Bursaphelenchus xylophilus BXY_1189000 I 0.000
CBG12152 Caenorhabditis briggsae CBG12152 I 0.000
CBG16375 Caenorhabditis briggsae CBG16375 I 0.000
CBN03440 Caenorhabditis brenneri CBN03440 I 0.000
CBN03769 Caenorhabditis brenneri CBN03769 I 0.000
CBN04619 Caenorhabditis brenneri CBN04619 I 0.000
CBN16902 Caenorhabditis brenneri CBN16902 I 0.000
CBN22974 Caenorhabditis brenneri CBN22974 I 0.000
CBN24070 Caenorhabditis brenneri CBN24070 I 0.000
CJA04414 Caenorhabditis japonica CJA04414 I 0.000
CJA07390 Caenorhabditis japonica CJA07390 I 0.000
CJA10576 Caenorhabditis japonica CJA10576 I 0.000
CRE07801 Caenorhabditis remanei CRE07801 I 0.000
CRE09011 Caenorhabditis remanei CRE09011 I 0.000
CRE17354 Caenorhabditis remanei CRE17354 I 0.000
CRE18529 Caenorhabditis remanei CRE18529 I 0.000
CRE27174 Caenorhabditis remanei CRE27174 I 0.000
CRE27659 Caenorhabditis remanei CRE27659 I 0.000
L889_g10781 Steinernema feltiae L889_g10781 I 0.000
L889_g9698 Steinernema feltiae L889_g9698 I 0.000
L889_g987 Steinernema feltiae L889_g987 I 0.000
L892_g8145 Steinernema scapterisci L892_g8145 I 0.000
L893_g4569 Steinernema glaseri L893_g4569 I 0.000
L893_g9517 Steinernema glaseri L893_g9517 I 0.000
SMUV_0000721901 Syphacia muris SMUV_0000721901 I 0.000
SMUV_0000801801 Syphacia muris SMUV_0000801801 I 0.000
nhr-12 Caenorhabditis elegans WBGene00003611 I 0.000
nhr-16 Caenorhabditis elegans WBGene00003615 I 0.000
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.000
nhr-53 Caenorhabditis elegans WBGene00003643 I 0.000
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.000
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.000
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.000
nhr-273 Caenorhabditis elegans WBGene00020460 I 0.000