CLOCK (Felis catus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSFCAG00000001064 T034164_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Clock
M01735_2.00
Mus musculus
NNCAYRTGNN

NNCAYRTGNN
PBM
Weirauch et al.(2014)
pTH5056
0.914 1.000
CLOCK
M02789_2.00
Homo sapiens
DACACGTGYH

DRCACGTGTH
SELEX
Jolma et al.(2013)
CLOCK_1
0.914 1.000
CLOCK
M04129_2.00
Homo sapiens
NMCACGTGYN

NRCACGTGKN
SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX
0.914 1.000
CLOCK
M08728_2.00
Homo sapiens
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C
0.914 1.000
Clock
M08760_2.00
Mus musculus
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C
0.914 1.000
Clock
M09473_2.00
Mus musculus
CACGTGNN

NNCACGTG
Misc
Heinz et al.(2010)
Liver-Clock_GSE39860
0.914 1.000
CLOCK
M09849_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CLOCK_Q6
0.914 1.000
CLOCK
M04130_2.00
Homo sapiens
NRCRCRTGBH

DVCAYGYGYN
SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX
0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFCAP00000000990 bHLH 35 85

Links

Other bHLH family TFs
Other Felis catus TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00001p00217560 Amborella trichopoda AMTR_s00001p00217560 I 0.000
AMTR_s00066p00109320 Amborella trichopoda AMTR_s00066p00109320 I 0.000
AMTR_s00089p00081270 Amborella trichopoda AMTR_s00089p00081270 I 0.000
Aquca_014_00308 Aquilegia coerulea Aquca_014_00308 I 0.000
Aquca_006_00072 Aquilegia coerulea Aquca_006_00072 I 0.000
PI Arabidopsis lyrata fgenesh2_kg.6__2063__AT5G20240.1 I 0.000
AP3 Arabidopsis lyrata fgenesh2_kg.5__1825__AT3G54340.1 I 0.000
PI Arabidopsis thaliana AT5G20240 D 0.000
AP3 Arabidopsis thaliana AT3G54340 D 0.000
Bostr.0697s0046 Boechera stricta Bostr.0697s0046 I 0.000
Bostr.26527s0175 Boechera stricta Bostr.26527s0175 I 0.000
BRADI1G35000 Brachypodium distachyon BRADI1G35000 I 0.000
BRADI2G57000 Brachypodium distachyon BRADI2G57000 I 0.000
Bo3g014100 Brassica oleracea Bo3g014100 I 0.000
Bo2g020730 Brassica oleracea Bo2g020730 I 0.000
Bo9g152080 Brassica oleracea Bo9g152080 I 0.000
Bo8g083600 Brassica oleracea Bo8g083600 I 0.000
Bo7g098190 Brassica oleracea Bo7g098190 I 0.000
Bo4g120010 Brassica oleracea Bo4g120010 I 0.000
Bo3g010390 Brassica oleracea Bo3g010390 I 0.000
Bra020093 Brassica rapa Bra020093 I 0.000
Bra014822 Brassica rapa Bra014822 I 0.000
Bra012997 Brassica rapa Bra012997 I 0.000
Bra007067 Brassica rapa Bra007067 I 0.000
Bra006549 Brassica rapa Bra006549 I 0.000
Bra002285 Brassica rapa Bra002285 I 0.000
Cagra.0562s0025 Capsella grandiflora Cagra.0562s0025 I 0.000
Cagra.0179s0008 Capsella grandiflora Cagra.0179s0008 I 0.000
Carubv10018833m.g Capsella rubella Carubv10018833m.g I 0.000
Carubv10001962m.g Capsella rubella Carubv10001962m.g I 0.000
evm.TU.supercontig_6.199 Carica papaya evm.TU.supercontig_6.199 I 0.000
evm.TU.supercontig_26.316 Carica papaya evm.TU.supercontig_26.316 I 0.000
evm.TU.supercontig_6.202 Carica papaya evm.TU.supercontig_6.202 I 0.000
Ca_01994 Cicer arietinum Ca_01994 I 0.000
Ca_04909 Cicer arietinum Ca_04909 I 0.000
Ca_13111 Cicer arietinum Ca_13111 I 0.000
Ca_03887 Cicer arietinum Ca_03887 I 0.000
Cla023547 Citrullus lanatus Cla023547 I 0.000
Cla021117 Citrullus lanatus Cla021117 I 0.000
Ciclev10026433m.g Citrus clementina Ciclev10026433m.g I 0.000
Ciclev10002422m.g Citrus clementina Ciclev10002422m.g I 0.000
Ciclev10002471m.g Citrus clementina Ciclev10002471m.g I 0.000
orange1.1g040096m.g Citrus sinensis orange1.1g040096m.g I 0.000
orange1.1g027470m.g Citrus sinensis orange1.1g027470m.g I 0.000
orange1.1g042044m.g Citrus sinensis orange1.1g042044m.g I 0.000
Cucsa.342790 Cucumis sativus Cucsa.342790 I 0.000
Cucsa.018420 Cucumis sativus Cucsa.018420 I 0.000
Eucgr.E01006 Eucalyptus grandis Eucgr.E01006 I 0.000
Eucgr.E01007 Eucalyptus grandis Eucgr.E01007 I 0.000
Thhalv10014683m.g Eutrema salsugineum Thhalv10014683m.g I 0.000
Thhalv10010683m.g Eutrema salsugineum Thhalv10010683m.g I 0.000
gene14896-v1.0-hybrid Fragaria vesca gene14896-v1.0-hybrid I 0.000
gene11267-v1.0-hybrid Fragaria vesca gene11267-v1.0-hybrid I 0.000
gene11268-v1.0-hybrid Fragaria vesca gene11268-v1.0-hybrid I 0.000
GLYMA04G02980 Glycine max GLYMA04G02980 I 0.000
GLYMA04G42420 Glycine max GLYMA04G42420 I 0.000
GLYMA06G02990 Glycine max GLYMA06G02990 I 0.000
GLYMA06G12380 Glycine max GLYMA06G12380 I 0.000
GLYMA09G33451 Glycine max GLYMA09G33451 I 0.000
GLYMA11G07820 Glycine max GLYMA11G07820 I 0.000
GLYMA13G09660 Glycine max GLYMA13G09660 I 0.000
GLYMA14G24590 Glycine max GLYMA14G24590 I 0.000
GLYMA01G37470 Glycine max GLYMA01G37470 I 0.000
GLYMA01G02525 Glycine max GLYMA01G02525 I 0.000
Gorai.008G064900 Gossypium raimondii Gorai.008G064900 I 0.000
Gorai.005G087600 Gossypium raimondii Gorai.005G087600 I 0.000
Gorai.002G223100 Gossypium raimondii Gorai.002G223100 I 0.000
Gorai.003G011500 Gossypium raimondii Gorai.003G011500 I 0.000
MLOC_31575 Hordeum vulgare MLOC_31575 I 0.000
LPERR01G34040 Leersia perrieri LPERR01G34040 I 0.000
LPERR06G22780 Leersia perrieri LPERR06G22780 I 0.000
Lus10033187.g Linum usitatissimum Lus10033187.g I 0.000
Lus10029719.g Linum usitatissimum Lus10029719.g I 0.000
Lus10010630.g Linum usitatissimum Lus10010630.g I 0.000
Lus10031960.g Linum usitatissimum Lus10031960.g I 0.000
Lus10042749.g Linum usitatissimum Lus10042749.g I 0.000
chr2.CM0249.370.nd Lotus japonicus chr2.CM0249.370.nd I 0.000
chr1.CM0195.210.nc Lotus japonicus chr1.CM0195.210.nc I 0.000
LjSGA_047687.2 Lotus japonicus LjSGA_047687.2 I 0.000
MDP0000133037 Malus domestica MDP0000133037 I 0.000
MDP0000184294 Malus domestica MDP0000184294 I 0.000
MDP0000224779 Malus domestica MDP0000224779 I 0.000
MDP0000315938 Malus domestica MDP0000315938 I 0.000
Q8VWZ4_MALDO Malus domestica Q8VWZ4_MALDO D 0.000
Q9AVU7_MALDO Malus domestica Q9AVU7_MALDO D 0.000
cassava41235.m1 Manihot esculenta cassava41235.m1 I 0.000
cassava37822.valid.m1 Manihot esculenta cassava37822.valid.m1 I 0.000
cassava37821.valid.m1 Manihot esculenta cassava37821.valid.m1 I 0.000
cassava33721.m1 Manihot esculenta cassava33721.m1 I 0.000
cassava33649.m1 Manihot esculenta cassava33649.m1 I 0.000
cassava32003.m1 Manihot esculenta cassava32003.m1 I 0.000
cassava21176.m1 Manihot esculenta cassava21176.m1 I 0.000
MTR_1g029670 Medicago truncatula MTR_1g029670 I 0.000
MTR_3g088615 Medicago truncatula MTR_3g088615 I 0.000
MTR_3g113030 Medicago truncatula MTR_3g113030 I 0.000
MTR_5g021270 Medicago truncatula MTR_5g021270 I 0.000
mgf003143m Mimulus guttatus mgf003143m I 0.000
mgf006158m Mimulus guttatus mgf006158m I 0.000
mgf008207m Mimulus guttatus mgf008207m I 0.000
GSMUA_Achr5G01230_001 Musa acuminata GSMUA_Achr5G01230_001 I 0.000
GSMUA_Achr9G20940_001 Musa acuminata GSMUA_Achr9G20940_001 I 0.000
GSMUA_Achr9G20950_001 Musa acuminata GSMUA_Achr9G20950_001 I 0.000
GSMUA_Achr6G18670_001 Musa acuminata GSMUA_Achr6G18670_001 I 0.000
OBART06G27230 Oryza barthii OBART06G27230 I 0.000
OBART05G17040 Oryza barthii OBART05G17040 I 0.000
OBART01G39540 Oryza barthii OBART01G39540 I 0.000
OB01G48280 Oryza brachyantha OB01G48280 I 0.000
OB05G24910 Oryza brachyantha OB05G24910 I 0.000
OB06G35020 Oryza brachyantha OB06G35020 I 0.000
ORGLA06G0229200 Oryza glaberrima ORGLA06G0229200 I 0.000
ORGLA05G0147400 Oryza glaberrima ORGLA05G0147400 I 0.000
ORGLA01G0334300 Oryza glaberrima ORGLA01G0334300 I 0.000
OGLUM01G43760 Oryza glumaepatula OGLUM01G43760 I 0.000
OGLUM06G28660 Oryza glumaepatula OGLUM06G28660 I 0.000
BGIOSGA000377 Oryza indica BGIOSGA000377 I 0.000
BGIOSGA019900 Oryza indica BGIOSGA019900 I 0.000
BGIOSGA020546 Oryza indica BGIOSGA020546 I 0.000
OLONG_004226 Oryza longistaminata OLONG_004226 I 0.000
OLONG_005253 Oryza longistaminata OLONG_005253 I 0.000
OLONG_003010 Oryza longistaminata OLONG_003010 I 0.000
OMERI01G36400 Oryza meridionalis OMERI01G36400 I 0.000
OMERI06G27290 Oryza meridionalis OMERI06G27290 I 0.000
OMERI05G14780 Oryza meridionalis OMERI05G14780 I 0.000
ONIVA01G44390 Oryza nivara ONIVA01G44390 I 0.000
ONIVA05G17790 Oryza nivara ONIVA05G17790 I 0.000
ONIVA06G29820 Oryza nivara ONIVA06G29820 I 0.000
OPUNC01G38250 Oryza punctata OPUNC01G38250 I 0.000
ORUFI06G29170 Oryza rufipogon ORUFI06G29170 I 0.000
ORUFI05G18270 Oryza rufipogon ORUFI05G18270 I 0.000
ORUFI05G05970 Oryza rufipogon ORUFI05G05970 I 0.000
MADS4 Oryza sativa OS05G0423400 I 0.000
MADS16 Oryza sativa OS06G0712700 D 0.000
MADS2 Oryza sativa OS01G0883100 D 0.000
Pavir.Aa03173 Panicum virgatum Pavir.Aa03173 I 0.000
Pavir.Ab00475 Panicum virgatum Pavir.Ab00475 I 0.000
Pavir.Ea03625 Panicum virgatum Pavir.Ea03625 I 0.000
Pavir.J11672 Panicum virgatum Pavir.J11672 I 0.000
Pavir.J19259 Panicum virgatum Pavir.J19259 I 0.000
Pavir.Db00185 Panicum virgatum Pavir.Db00185 I 0.000
MADS2_PETHY Petunia x hybrida MADS2_PETHY D 0.000
FBP1_PETHY Petunia x hybrida FBP1_PETHY D 0.000
POPTR_0002s07920 Populus trichocarpa POPTR_0002s07920 I 0.000
POPTR_0005s12000 Populus trichocarpa POPTR_0005s12000 I 0.000
POPTR_0005s20480 Populus trichocarpa POPTR_0005s20480 I 0.000
Pm006266 Prunus mume Pm006266 I 0.000
Pm004718 Prunus mume Pm004718 I 0.000
Pm026712 Prunus mume Pm026712 I 0.000
PRUPE_ppa010727mg Prunus persica PRUPE_ppa010727mg I 0.000
PRUPE_ppa026083mg Prunus persica PRUPE_ppa026083mg I 0.000
PRUPE_ppa012927mg Prunus persica PRUPE_ppa012927mg I 0.000
29648.m001978 Ricinus communis 29648.m001978 I 0.000
29782.m000119 Ricinus communis 29782.m000119 I 0.000
SapurV1A.0829s0180 Salix purpurea SapurV1A.0829s0180 I 0.000
SapurV1A.2002s0050 Salix purpurea SapurV1A.2002s0050 I 0.000
Si002929m.g Setaria italica Si002929m.g I 0.000
Si018183m.g Setaria italica Si018183m.g I 0.000
Solyc08g067230.2 Solanum lycopersicum Solyc08g067230.2 I 0.000
Solyc06g059970.2 Solanum lycopersicum Solyc06g059970.2 I 0.000
Solyc02g084630.2 Solanum lycopersicum Solyc02g084630.2 I 0.000
PGSC0003DMG401007392 Solanum tuberosum PGSC0003DMG401007392 I 0.000
PGSC0003DMG400003541 Solanum tuberosum PGSC0003DMG400003541 I 0.000
Sb03g041860 Sorghum bicolor Sb03g041860 I 0.000
Sb10g029810 Sorghum bicolor Sb10g029810 I 0.000
Sb09g020770 Sorghum bicolor Sb09g020770 I 0.000
Sb04g004736 Sorghum bicolor Sb04g004736 I 0.000
TCM_035212 Theobroma cacao TCM_035212 I 0.000
TCM_000266 Theobroma cacao TCM_000266 I 0.000
Traes_7DL_DDCC09B24 Triticum aestivum Traes_7DL_DDCC09B24 I 0.000
Traes_7BL_7F4124E70 Triticum aestivum Traes_7BL_7F4124E70 I 0.000
Traes_7AL_1C76E543C Triticum aestivum Traes_7AL_1C76E543C I 0.000
TRIUR3_29719 Triticum urartu TRIUR3_29719 I 0.000
AP3 Vitis vinifera VIT_18s0001g13460 I 0.000
PI Vitis vinifera VIT_18s0001g01760 I 0.000
VIT_04s0023g02820 Vitis vinifera VIT_04s0023g02820 I 0.000
GRMZM2G139073 Zea mays GRMZM2G139073 I 0.000
M17_MAIZE Zea mays M17_MAIZE D 0.000
GRMZM2G110153 Zea mays GRMZM2G110153 I 0.000