Carubv10028430m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10028430m.g T049457_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH28
M06742_2.00 		Arabidopsis thaliana
NNNYGTACGGAH
DTCCGTACRNNN		 Dap-seq
OMalley et al.(2016)
bHLH28_col_a 		0.894 0.959
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028430m bHLH 304 352

Links

Other bHLH family TFs
Other Capsella rubella TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0751s0016 Capsella grandiflora Cagra.0751s0016 I 0.914
BHLH28 Arabidopsis thaliana AT5G46830 D 0.894
ATNIG1 Arabidopsis lyrata Al_scaffold_0008_132 I 0.894
OB07G15330 Oryza brachyantha OB07G15330 I 0.849
PK23618.1 Cannabis sativa PK23618.1 I 0.844
Cla006801 Citrullus lanatus Cla006801 I 0.844
Cla006802 Citrullus lanatus Cla006802 I 0.844
Cucsa.120830 Cucumis sativus Cucsa.120830 I 0.844