CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_1892.1
(
Carica papaya
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
evm.TU.supercontig_1892.1
T049747_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.847
0.854
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN
NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.847
0.854
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK
MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.847
0.854
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.847
0.833
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.847
0.833
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_1892.1
bHLH
302
349
LNHVEAERQRRERLNNRFYALRSVVPNVSKMDKASLLSDAVTYIKELK
Links
Other
bHLH
family TFs
Other
Carica papaya
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30068.m002581
Ricinus communis
30068.m002581
I
0.914
cassava41468.m1
Manihot esculenta
cassava41468.m1
I
0.894
cassava45188.m1
Manihot esculenta
cassava45188.m1
I
0.894
cassava40529.m1
Manihot esculenta
cassava40529.m1
I
0.894
cassava39612.m1
Manihot esculenta
cassava39612.m1
I
0.894
POPTR_0003s14710
Populus trichocarpa
POPTR_0003s14710
I
0.894
cassava45233.m1
Manihot esculenta
cassava45233.m1
I
0.894
cassava45234.m1
Manihot esculenta
cassava45234.m1
I
0.894
SapurV1A.0059s0390
Salix purpurea
SapurV1A.0059s0390
I
0.894
SapurV1A.0094s0280
Salix purpurea
SapurV1A.0094s0280
I
0.883
POPTR_0001s11400
Populus trichocarpa
POPTR_0001s11400
I
0.883
TCM_015640
Theobroma cacao
TCM_015640
N
0.870
orange1.1g010053m.g
Citrus sinensis
orange1.1g010053m.g
N
0.870
Gorai.008G259000
Gossypium raimondii
Gorai.008G259000
N
0.870
Ciclev10019730m.g
Citrus clementina
Ciclev10019730m.g
N
0.870
PK23618.1
Cannabis sativa
PK23618.1
I
0.866
Cla006801
Citrullus lanatus
Cla006801
I
0.866
Cucsa.120830
Cucumis sativus
Cucsa.120830
I
0.866
Cla006802
Citrullus lanatus
Cla006802
I
0.866
MTR_8g024770
Medicago truncatula
MTR_8g024770
I
0.859
GLYMA02G09670
Glycine max
GLYMA02G09670
I
0.859
PGSC0003DMG400012237
Solanum tuberosum
PGSC0003DMG400012237
I
0.859
Solyc08g083170.1
Solanum lycopersicum
Solyc08g083170.1
I
0.859
PRUPE_ppa005343mg
Prunus persica
PRUPE_ppa005343mg
I
0.859
Pm029399
Prunus mume
Pm029399
I
0.859
gene01894-v1.0-hybrid
Fragaria vesca
gene01894-v1.0-hybrid
I
0.859
Sb09g008120
Sorghum bicolor
Sb09g008120
I
0.859
MTR_8g024790
Medicago truncatula
MTR_8g024790
I
0.859
Pavir.Cb01851
Panicum virgatum
Pavir.Cb01851
I
0.859
Pavir.Ca00449
Panicum virgatum
Pavir.Ca00449
I
0.859
Si021549m.g
Setaria italica
Si021549m.g
I
0.859
BRADI3G41940
Brachypodium distachyon
BRADI3G41940
N
0.857
Cla008954
Citrullus lanatus
Cla008954
I
0.856
Cucsa.321840
Cucumis sativus
Cucsa.321840
I
0.856
GSMUA_Achr5G29390_001
Musa acuminata
GSMUA_Achr5G29390_001
N
0.854
Gorai.012G124100
Gossypium raimondii
Gorai.012G124100
N
0.851
Solyc05g009880.2
Solanum lycopersicum
Solyc05g009880.2
I
0.850
Solyc04g006990.2
Solanum lycopersicum
Solyc04g006990.2
I
0.850
Cla000223
Citrullus lanatus
Cla000223
I
0.850
Ca_24775
Cicer arietinum
Ca_24775
I
0.850
Bo6g108270
Brassica oleracea
Bo6g108270
I
0.850
Thhalv10018758m.g
Eutrema salsugineum
Thhalv10018758m.g
I
0.850
chr2.CM0749.390.nc
Lotus japonicus
chr2.CM0749.390.nc
I
0.850
BHLH30
Arabidopsis thaliana
AT1G68810
I
0.850
Carubv10020515m.g
Capsella rubella
Carubv10020515m.g
I
0.850
Bostr.26959s0001
Boechera stricta
Bostr.26959s0001
I
0.850
Cagra.1157s0003
Capsella grandiflora
Cagra.1157s0003
I
0.850
Bra004338
Brassica rapa
Bra004338
I
0.850
Bra004015
Brassica rapa
Bra004015
I
0.850
fgenesh2_kg.2__1138__AT1G68810.1
Arabidopsis lyrata
fgenesh2_kg.2__1138__AT1G68810.1
I
0.850
PGSC0003DMG400000824
Solanum tuberosum
PGSC0003DMG400000824
I
0.850
GLYMA02G11190
Glycine max
GLYMA02G11190
I
0.850
GLYMA01G22530
Glycine max
GLYMA01G22530
I
0.850
Bo7g075710
Brassica oleracea
Bo7g075710
I
0.847
Bo5g086990
Brassica oleracea
Bo5g086990
I
0.847
Bo8g028850
Brassica oleracea
Bo8g028850
I
0.847
Bo1g017990
Brassica oleracea
Bo1g017990
I
0.847
Bo9g065530
Brassica oleracea
Bo9g065530
I
0.847
Gorai.003G182100
Gossypium raimondii
Gorai.003G182100
I
0.847
MYC3
Arabidopsis thaliana
AT5G46760
D
0.847
Bo01130s010
Brassica oleracea
Bo01130s010
I
0.847
Bra017527
Brassica rapa
Bra017527
I
0.847
Bo9g066680
Brassica oleracea
Bo9g066680
I
0.847
GLYMA09G33730
Glycine max
GLYMA09G33730
I
0.847
mgf002775m
Mimulus guttatus
mgf002775m
I
0.847
MDP0000029168
Malus domestica
MDP0000029168
I
0.847
Cagra.3356s0080
Capsella grandiflora
Cagra.3356s0080
I
0.847
Cagra.7865s0024
Capsella grandiflora
Cagra.7865s0024
I
0.847
GLYMA01G12740
Glycine max
GLYMA01G12740
I
0.847
Carubv10004392m.g
Capsella rubella
Carubv10004392m.g
I
0.847
MDP0000136498
Malus domestica
MDP0000136498
I
0.847
Cagra.0751s0023
Capsella grandiflora
Cagra.0751s0023
I
0.847
Bostr.28243s0060
Boechera stricta
Bostr.28243s0060
I
0.847
GLYMA08G36720
Glycine max
GLYMA08G36720
I
0.847
Bostr.30275s0255
Boechera stricta
Bostr.30275s0255
I
0.847
Bostr.3359s0090
Boechera stricta
Bostr.3359s0090
I
0.847
POPTR_0003s09090
Populus trichocarpa
POPTR_0003s09090
I
0.847
Carubv10028441m.g
Capsella rubella
Carubv10028441m.g
I
0.847
Pm023237
Prunus mume
Pm023237
I
0.847
Bra024998
Brassica rapa
Bra024998
I
0.847
Thhalv10024688m.g
Eutrema salsugineum
Thhalv10024688m.g
I
0.847
Thhalv10007075m.g
Eutrema salsugineum
Thhalv10007075m.g
I
0.847
PGSC0003DMG400017535
Solanum tuberosum
PGSC0003DMG400017535
I
0.847
Solyc08g076930.1
Solanum lycopersicum
Solyc08g076930.1
I
0.847
PK18474.1
Cannabis sativa
PK18474.1
D
0.847
scaffold_800152.1
Arabidopsis lyrata
scaffold_800152.1
I
0.847
chr2.CM0177.830.nc
Lotus japonicus
chr2.CM0177.830.nc
I
0.847
PRUPE_ppa002404mg
Prunus persica
PRUPE_ppa002404mg
I
0.847
MYC2
Arabidopsis thaliana
AT1G32640
D
0.847
Bra017523
Brassica rapa
Bra017523
I
0.847
ATMYC2
Arabidopsis lyrata
scaffold_103634.1
I
0.847
PGSC0003DMG400001161
Solanum tuberosum
PGSC0003DMG400001161
I
0.847
Thhalv10000808m.g
Eutrema salsugineum
Thhalv10000808m.g
I
0.847
fgenesh2_kg.7__2520__AT4G17880.1
Arabidopsis lyrata
fgenesh2_kg.7__2520__AT4G17880.1
I
0.847
Bra010178
Brassica rapa
Bra010178
I
0.847
GLYMA01G02251
Glycine max
GLYMA01G02251
I
0.847
MTR_5g030430
Medicago truncatula
MTR_5g030430
I
0.847
Carubv10008586m.g
Capsella rubella
Carubv10008586m.g
I
0.847
gene10501-v1.0-hybrid
Fragaria vesca
gene10501-v1.0-hybrid
I
0.847
Bra013263
Brassica rapa
Bra013263
I
0.847
Ca_12352
Cicer arietinum
Ca_12352
I
0.847
SapurV1A.0151s0080
Salix purpurea
SapurV1A.0151s0080
I
0.847
MYC4
Arabidopsis thaliana
AT4G17880
D
0.847
Ca_11514
Cicer arietinum
Ca_11514
I
0.847
Gorai.004G149500
Gossypium raimondii
Gorai.004G149500
I
0.846
Gorai.008G128800
Gossypium raimondii
Gorai.008G128800
I
0.846
Gorai.007G111800
Gossypium raimondii
Gorai.007G111800
I
0.846
MDP0000729514
Malus domestica
MDP0000729514
I
0.846
orange1.1g046178m.g
Citrus sinensis
orange1.1g046178m.g
I
0.846
SapurV1A.0003s0670
Salix purpurea
SapurV1A.0003s0670
I
0.846
Bra024993
Brassica rapa
Bra024993
I
0.846
MDP0000900024
Malus domestica
MDP0000900024
I
0.846
MDP0000859492
Malus domestica
MDP0000859492
I
0.846
MDP0000224302
Malus domestica
MDP0000224302
I
0.846
MDP0000242554
Malus domestica
MDP0000242554
I
0.846
MDP0000603546
Malus domestica
MDP0000603546
I
0.846
MDP0000160600
Malus domestica
MDP0000160600
I
0.846
Bostr.7365s0026
Boechera stricta
Bostr.7365s0026
I
0.846
27964.m000352
Ricinus communis
27964.m000352
I
0.846
VIT_15s0048g02820
Vitis vinifera
VIT_15s0048g02820
I
0.846
Gorai.001G151700
Gossypium raimondii
Gorai.001G151700
I
0.846
GSMUA_Achr1G18910_001
Musa acuminata
GSMUA_Achr1G18910_001
I
0.846
cassava29800.valid.m1
Manihot esculenta
cassava29800.valid.m1
I
0.846
VIT_02s0025g02610
Vitis vinifera
VIT_02s0025g02610
I
0.846
TCM_005064
Theobroma cacao
TCM_005064
I
0.846
PRUPE_ppa004680mg
Prunus persica
PRUPE_ppa004680mg
I
0.846
POPTR_0002s17750
Populus trichocarpa
POPTR_0002s17750
I
0.846
Solyc01g096370.2
Solanum lycopersicum
Solyc01g096370.2
I
0.846
PGSC0003DMG400018332
Solanum tuberosum
PGSC0003DMG400018332
I
0.846
cassava32651.m1
Manihot esculenta
cassava32651.m1
I
0.846
27964.m000356
Ricinus communis
27964.m000356
I
0.846
gene18651-v1.0-hybrid
Fragaria vesca
gene18651-v1.0-hybrid
I
0.846
evm.TU.supercontig_141.19
Carica papaya
evm.TU.supercontig_141.19
I
0.846
GLYMA16G02320
Glycine max
GLYMA16G02320
I
0.846
Carubv10001082m.g
Capsella rubella
Carubv10001082m.g
I
0.846
Ciclev10019749m.g
Citrus clementina
Ciclev10019749m.g
I
0.846
Eucgr.E00019
Eucalyptus grandis
Eucgr.E00019
I
0.846
Aquca_037_00261
Aquilegia coerulea
Aquca_037_00261
I
0.846
Cagra.4923s0009
Capsella grandiflora
Cagra.4923s0009
I
0.846
GLYMA07G05740
Glycine max
GLYMA07G05740
I
0.846
mgf001993m
Mimulus guttatus
mgf001993m
I
0.846
Ca_17603
Cicer arietinum
Ca_17603
I
0.845
Gorai.004G184800
Gossypium raimondii
Gorai.004G184800
I
0.844
MTR_8g067280
Medicago truncatula
MTR_8g067280
I
0.844
Bra017520
Brassica rapa
Bra017520
I
0.844
Gorai.007G059100
Gossypium raimondii
Gorai.007G059100
N
0.842
Ca_09378
Cicer arietinum
Ca_09378
I
0.841
MTR_4g097950
Medicago truncatula
MTR_4g097950
I
0.841
AMTR_s00002p00019320
Amborella trichopoda
AMTR_s00002p00019320
I
0.841
Solyc02g091820.1
Solanum lycopersicum
Solyc02g091820.1
N
0.840
PGSC0003DMG400030623
Solanum tuberosum
PGSC0003DMG400030623
N
0.840