CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.004G035800
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.004G035800
T049956_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.879
0.863
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.858
0.784
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.858
0.784
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.855
0.843
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.855
0.843
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.004G035800.1
bHLH
274
324
ATHPRSIAERMRRTRISERMRKLQGLFPNIDKQTNTADMLDMAVEYIKDLQ
Gorai.004G035800.2
bHLH
274
324
ATHPRSIAERMRRTRISERMRKLQGLFPNIDKQTNTADMLDMAVEYIKDLQ
Gorai.004G035800.3
bHLH
274
324
ATHPRSIAERMRRTRISERMRKLQGLFPNIDKQTNTADMLDMAVEYIKDLQ
Gorai.004G035800.4
bHLH
197
247
ATHPRSIAERMRRTRISERMRKLQGLFPNIDKQTNTADMLDMAVEYIKDLQ
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
216 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy