orange1.1g038298m.g (Citrus sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 orange1.1g038298m.g T050604_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.863 0.660
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g038298m bHLH 95 144

Links

Other bHLH family TFs
Other Citrus sinensis TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10023770m.g Citrus clementina Ciclev10023770m.g I 0.914
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.883
POPTR_0007s14480 Populus trichocarpa POPTR_0007s14480 I 0.874
Cla014288 Citrullus lanatus Cla014288 I 0.872
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.872
Bra013128 Brassica rapa Bra013128 I 0.870
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.867
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.864
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.863
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.863
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.863
MDP0000159571 Malus domestica MDP0000159571 I 0.863
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.863
MDP0000170202 Malus domestica MDP0000170202 I 0.863
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.863
Bo4g150960 Brassica oleracea Bo4g150960 I 0.863
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.863
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.863
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.863
Bra030210 Brassica rapa Bra030210 I 0.863
Bra039924 Brassica rapa Bra039924 I 0.863
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.862
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.861
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.861
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.861
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.861
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.861
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.861
28179.m000479 Ricinus communis 28179.m000479 I 0.861
29804.m001498 Ricinus communis 29804.m001498 I 0.861
28179.m000478 Ricinus communis 28179.m000478 I 0.861
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.861
Pm002305 Prunus mume Pm002305 I 0.861
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.861
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.861
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.861
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.861
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.861
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.861
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.861
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.861
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.861
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.861
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.861
MDP0000502440 Malus domestica MDP0000502440 I 0.861
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.861
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.861
PK11573.1 Cannabis sativa PK11573.1 I 0.861
PK09122.1 Cannabis sativa PK09122.1 I 0.861
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.861
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.861
MDP0000318216 Malus domestica MDP0000318216 I 0.861
MDP0000291132 Malus domestica MDP0000291132 I 0.861
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.861
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.861
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.861
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.861
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.861
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.861
MDP0000174149 Malus domestica MDP0000174149 I 0.861
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.861
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.861
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.861
Pm021008 Prunus mume Pm021008 I 0.861
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.861
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.861
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.861
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.861
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.861
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.861
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.861
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.861
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.861
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.861
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.861
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.861
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.861
OBART03G32580 Oryza barthii OBART03G32580 I 0.861
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.861
OS03G0725800 Oryza sativa OS03G0725800 I 0.861
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.861
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.861
Si036393m.g Setaria italica Si036393m.g I 0.861
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.861
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.861
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.861
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.861
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.861
Cla000123 Citrullus lanatus Cla000123 I 0.861
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.861
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.861
TCM_006357 Theobroma cacao TCM_006357 I 0.861
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.861
TCM_000895 Theobroma cacao TCM_000895 I 0.861
Ca_02263 Cicer arietinum Ca_02263 I 0.855
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.854
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.854
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I 0.853
GLYMA11G04681 Glycine max GLYMA11G04681 I 0.852
Ca_02264 Cicer arietinum Ca_02264 I 0.852
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.852
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.852
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.851
TCM_000894 Theobroma cacao TCM_000894 I 0.851
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.851
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.851
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.851
Carubv10006834m.g Capsella rubella Carubv10006834m.g I 0.850
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I 0.850
Bo3g153150 Brassica oleracea Bo3g153150 I 0.850
Bra010617 Brassica rapa Bra010617 I 0.850
Bo1g003350 Brassica oleracea Bo1g003350 I 0.850
BHLH25 Arabidopsis thaliana AT4G37850 I 0.850
Bra011790 Brassica rapa Bra011790 I 0.850
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I 0.850
Bo3g088300 Brassica oleracea Bo3g088300 I 0.849
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.848
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.848
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.848
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.848
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.848
Cucsa.103610 Cucumis sativus Cucsa.103610 I 0.842
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.841
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.841
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.841
Pm002304 Prunus mume Pm002304 I 0.841
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.841
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.841
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.841
F775_11371 Aegilops tauschii F775_11371 I 0.841
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.841
Eucgr.H02391 Eucalyptus grandis Eucgr.H02391 I 0.839
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I 0.839