estExt_fgenesh2_pg.C_4050010 (Branchiostoma floridae)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 estExt_fgenesh2_pg.C_4050010 T070852_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Creb5
M02866_2.00
Mus musculus
NATGACGTCAYH

DRTGACGTCATN
SELEX
Jolma et al.(2013)
Creb5_1
0.919 0.797
CREB5
M04299_2.00
Homo sapiens
NVTKACRTMABN

NVTKAYGTMABN
SELEX
Yin et al.(2017)
CREB5_eDBD_HT-SELEX
0.919 0.797
CREB5
M04301_2.00
Homo sapiens
NRTKACGTMAYN

NRTKACGTMAYN
SELEX
Yin et al.(2017)
CREB5_FL_HT-SELEX
0.919 0.797
CREB5
M04300_2.00
Homo sapiens
NRTKACRTCAYN

NRTGAYGTMAYN
SELEX
Yin et al.(2017)
CREB5_eDBD_Methyl-HT-SELEX
0.919 0.797
CREB5
M04302_2.00
Homo sapiens
NATGACRTCAYN

NRTGAYGTCATN
SELEX
Yin et al.(2017)
CREB5_FL_Methyl-HT-SELEX
0.919 0.797
Atf7
M01823_2.00
Mus musculus
HKACGTMAYN

NRTKACGTMD
PBM
Weirauch et al.(2014)
pTH5081
0.916 0.828
Atf2
M01808_2.00
Mus musculus
NRTKAYGYMD

HKRCRTMAYN
PBM
Weirauch et al.(2014)
pTH5083
0.879 0.812
Atf2
M08827_2.00
Mus musculus
VTGACVTCABY

RVTGABGTCAB
Misc
Kulakovskiy et al.(2013)
ATF2_MOUSE.H11MO.0.A
0.879 0.812
Atf2
M09493_2.00
Mus musculus
NNVTGABVTCAB

VTGABVTCABNN
Misc
Heinz et al.(2010)
3T3L1-Atf2_GSE56872
0.879 0.812
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_4050010 bZIP 349 412

Links

Other bZIP family TFs
Other Branchiostoma floridae TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.000
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.000
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.000
WER Arabidopsis thaliana AT5G14750 D 0.000
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.000
Bo2g012170 Brassica oleracea Bo2g012170 I 0.000
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.000
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.000
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.000
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.000
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.000
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.000
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.000
gene32181-v1.0-hybrid Fragaria vesca gene32181-v1.0-hybrid I 0.000
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.000
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.000
MDP0000650225 Malus domestica MDP0000650225 I 0.000
MDP0000578193 Malus domestica MDP0000578193 I 0.000
MDP0000537324 Malus domestica MDP0000537324 I 0.000
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.000
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.000
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.000
Pm024725 Prunus mume Pm024725 I 0.000
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.000
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.000
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.000
TCM_012057 Theobroma cacao TCM_012057 I 0.000
TCM_016886 Theobroma cacao TCM_016886 I 0.000
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.000