CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G004400
(
Gossypium raimondii
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Gorai.013G004400
T071989_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK09021.1
M01155_2.00
Cannabis sativa
NNTGACGTMA
TKACGTCANN
PBM
Lambert et al.(2019)
pTH10175
0.783
0.980
TGA6
M01780_2.00
Arabidopsis thaliana
NNTGACGTMA
TKACGTCANN
PBM
Weirauch et al.(2014)
pTH8691
0.783
0.959
TGA6
M01055_2.00
Arabidopsis thaliana
NNVTGACGTMN
NKACGTCABNN
PBM
Sullivan et al.(2014)
pTH8858
0.783
0.959
TGA2
M01784_2.00
Arabidopsis thaliana
NNACGTCABN
NVTGACGTNN
PBM
Weirauch et al.(2014)
pTH8820
0.783
0.959
TGA2
M00856_2.00
Arabidopsis thaliana
NVTGACGTMN
NKACGTCABN
PBM
Franco-Zorrilla et al.(2014)
TGA2
0.783
0.959
TGA5
M01785_2.00
Arabidopsis thaliana
VTGACGTN
NACGTCAB
PBM
Weirauch et al.(2014)
pTH8180
0.783
0.959
TGA2
M06785_2.00
Arabidopsis thaliana
YNMCGYCABCD
HGVTGRCGKNR
Dap-seq
OMalley et al.(2016)
TGA2_colamp_v31
0.783
0.959
TGA2
M06786_2.00
Arabidopsis thaliana
NNNNNDNHGMTGACGTCAYH
DRTGACGTCAKCDNHNNNNN
Dap-seq
OMalley et al.(2016)
TGA2_col
0.783
0.959
TGA5
M06787_2.00
Arabidopsis thaliana
DRTGACGTCAKCDN
NHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA5_col_v3a
0.783
0.959
TGA6
M06773_2.00
Arabidopsis thaliana
DRTGACGTCAKCDNN
NNHGMTGACGTCAYH
Dap-seq
OMalley et al.(2016)
TGA6_col_a
0.783
0.959
TGA6
M06774_2.00
Arabidopsis thaliana
NRTGACGTCAKCDNN
NNHGMTGACGTCAYN
Dap-seq
OMalley et al.(2016)
TGA6_colamp_a
0.783
0.959
TGA2
M09917_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_01
0.783
0.959
TGA2
M09918_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$TGA2_Q2
0.783
0.959
HBP1B_WHEAT
M10043_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$HBP1B_Q6
0.783
0.939
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G004400.1
bZIP
129
177
DQKILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ
Gorai.013G004400.2
bZIP
129
177
DQKILRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ
Links
Other
bZIP
family TFs
Other
Gossypium raimondii
TFs
120 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ea01074
Panicum virgatum
Pavir.Ea01074
I
0.798
mgf003015m
Mimulus guttatus
mgf003015m
I
0.790
OPUNC06G09770
Oryza punctata
OPUNC06G09770
N
0.787
mgf016587m
Mimulus guttatus
mgf016587m
N
0.787
chr4.CM0234.370.nd
Lotus japonicus
chr4.CM0234.370.nd
N
0.785
BRADI1G43900
Brachypodium distachyon
BRADI1G43900
N
0.785
Bostr.3640s0002
Boechera stricta
Bostr.3640s0002
I
0.783
Cagra.0430s0055
Capsella grandiflora
Cagra.0430s0055
I
0.783
Bostr.13129s0279
Boechera stricta
Bostr.13129s0279
I
0.783
Cagra.16209s0004
Capsella grandiflora
Cagra.16209s0004
I
0.783
Ciclev10005080m.g
Citrus clementina
Ciclev10005080m.g
I
0.783
Eucgr.A02240
Eucalyptus grandis
Eucgr.A02240
I
0.783
Ciclev10001081m.g
Citrus clementina
Ciclev10001081m.g
I
0.783
Carubv10001413m.g
Capsella rubella
Carubv10001413m.g
I
0.783
Bostr.13129s0278
Boechera stricta
Bostr.13129s0278
I
0.783
Carubv10001409m.g
Capsella rubella
Carubv10001409m.g
I
0.783
Cagra.16209s0003
Capsella grandiflora
Cagra.16209s0003
I
0.783
mgf005858m
Mimulus guttatus
mgf005858m
I
0.783
cassava1427.valid.m1
Manihot esculenta
cassava1427.valid.m1
I
0.783
cassava22236.valid.m1
Manihot esculenta
cassava22236.valid.m1
I
0.783
cassava1426.valid.m1
Manihot esculenta
cassava1426.valid.m1
I
0.783
30131.m007163
Ricinus communis
30131.m007163
I
0.783
Pm028917
Prunus mume
Pm028917
I
0.783
cassava22237.valid.m1
Manihot esculenta
cassava22237.valid.m1
I
0.783
cassava6928.valid.m1
Manihot esculenta
cassava6928.valid.m1
I
0.783
Eucgr.G03217
Eucalyptus grandis
Eucgr.G03217
I
0.783
Aquca_004_00791
Aquilegia coerulea
Aquca_004_00791
I
0.783
Cucsa.337740
Cucumis sativus
Cucsa.337740
I
0.783
Cucsa.307820
Cucumis sativus
Cucsa.307820
I
0.783
Cucsa.005120
Cucumis sativus
Cucsa.005120
I
0.783
Aquca_009_00424
Aquilegia coerulea
Aquca_009_00424
I
0.783
evm.TU.supercontig_5.165
Carica papaya
evm.TU.supercontig_5.165
I
0.783
Pavir.Eb01160
Panicum virgatum
Pavir.Eb01160
I
0.783
SapurV1A.0079s0330
Salix purpurea
SapurV1A.0079s0330
I
0.783
orange1.1g045786m.g
Citrus sinensis
orange1.1g045786m.g
I
0.783
orange1.1g015258m.g
Citrus sinensis
orange1.1g015258m.g
I
0.783
MDP0000320524
Malus domestica
MDP0000320524
I
0.783
MDP0000536881
Malus domestica
MDP0000536881
I
0.783
SapurV1A.0189s0240
Salix purpurea
SapurV1A.0189s0240
I
0.783
SapurV1A.0196s0260
Salix purpurea
SapurV1A.0196s0260
I
0.783
PK13754.1
Cannabis sativa
PK13754.1
I
0.783
chr1.CM0009.80.nd
Lotus japonicus
chr1.CM0009.80.nd
I
0.783
PK09021.1
Cannabis sativa
PK09021.1
D
0.783
Thhalv10021187m.g
Eutrema salsugineum
Thhalv10021187m.g
I
0.783
Thhalv10014082m.g
Eutrema salsugineum
Thhalv10014082m.g
I
0.783
MDP0000300532
Malus domestica
MDP0000300532
I
0.783
MDP0000262210
Malus domestica
MDP0000262210
I
0.783
gene21882-v1.0-hybrid
Fragaria vesca
gene21882-v1.0-hybrid
I
0.783
Gorai.007G352600
Gossypium raimondii
Gorai.007G352600
I
0.783
evm.TU.supercontig_847.1
Carica papaya
evm.TU.supercontig_847.1
I
0.783
Pm016643
Prunus mume
Pm016643
I
0.783
evm.TU.supercontig_1.202
Carica papaya
evm.TU.supercontig_1.202
I
0.783
Gorai.008G185000
Gossypium raimondii
Gorai.008G185000
I
0.783
Gorai.011G217200
Gossypium raimondii
Gorai.011G217200
I
0.783
Lus10024140.g
Linum usitatissimum
Lus10024140.g
I
0.783
Lus10026166.g
Linum usitatissimum
Lus10026166.g
I
0.783
Lus10008658.g
Linum usitatissimum
Lus10008658.g
I
0.783
Gorai.013G081100
Gossypium raimondii
Gorai.013G081100
I
0.783
Gorai.013G001700
Gossypium raimondii
Gorai.013G001700
I
0.783
Eucgr.K01643
Eucalyptus grandis
Eucgr.K01643
I
0.783
Cla010092
Citrullus lanatus
Cla010092
I
0.783
GLYMA19G31050
Glycine max
GLYMA19G31050
I
0.783
GLYMA20G39050
Glycine max
GLYMA20G39050
I
0.783
GLYMA15G37220
Glycine max
GLYMA15G37220
I
0.783
GLYMA13G26280
Glycine max
GLYMA13G26280
I
0.783
OBF5
Arabidopsis lyrata
fgenesh2_kg.6__648__AT5G06960.1
I
0.783
GLYMA03G28320
Glycine max
GLYMA03G28320
I
0.783
GRMZM2G030280
Zea mays
GRMZM2G030280
I
0.783
GSMUA_Achr10G00340_001
Musa acuminata
GSMUA_Achr10G00340_001
I
0.783
HBP1B_WHEAT
Triticum aestivum
HBP1B_WHEAT
D
0.783
LPERR01G10700
Leersia perrieri
LPERR01G10700
I
0.783
GSMUA_Achr8G05800_001
Musa acuminata
GSMUA_Achr8G05800_001
I
0.783
GSMUA_Achr3G25020_001
Musa acuminata
GSMUA_Achr3G25020_001
I
0.783
GSMUA_Achr11G25140_001
Musa acuminata
GSMUA_Achr11G25140_001
I
0.783
TGA6
Arabidopsis lyrata
fgenesh2_kg.3__1288__AT3G12250.4
I
0.783
BRADI2G10830
Brachypodium distachyon
BRADI2G10830
I
0.783
Bo2g007460
Brassica oleracea
Bo2g007460
I
0.783
Bo3g064830
Brassica oleracea
Bo3g064830
I
0.783
Bo1g139470
Brassica oleracea
Bo1g139470
I
0.783
BGIOSGA003265
Oryza indica
BGIOSGA003265
I
0.783
TGA2
Arabidopsis thaliana
AT5G06950
D
0.783
TGA5
Arabidopsis thaliana
AT5G06960
D
0.783
Bo5g133550
Brassica oleracea
Bo5g133550
I
0.783
Bo9g175710
Brassica oleracea
Bo9g175710
I
0.783
Bra034767
Brassica rapa
Bra034767
I
0.783
Bra038705
Brassica rapa
Bra038705
I
0.783
Bra028713
Brassica rapa
Bra028713
I
0.783
Bra009241
Brassica rapa
Bra009241
I
0.783
Bra001443
Brassica rapa
Bra001443
I
0.783
MTR_7g089800
Medicago truncatula
MTR_7g089800
I
0.783
MTR_8g040120
Medicago truncatula
MTR_8g040120
I
0.783
TRAES3BF003000030CFD_g
Triticum aestivum
TRAES3BF003000030CFD_g
I
0.783
PAN
Vitis vinifera
VIT_01s0011g03230
I
0.783
TCM_023492
Theobroma cacao
TCM_023492
I
0.783
TCM_023491
Theobroma cacao
TCM_023491
I
0.783
Solyc11g064950.1
Solanum lycopersicum
Solyc11g064950.1
I
0.783
TCM_011845
Theobroma cacao
TCM_011845
I
0.783
VIT_08s0007g05170
Vitis vinifera
VIT_08s0007g05170
I
0.783
VIT_13s0084g00660
Vitis vinifera
VIT_13s0084g00660
I
0.783
Cla002918
Citrullus lanatus
Cla002918
I
0.783
TGA6
Arabidopsis thaliana
AT3G12250
D
0.783
Ca_17971
Cicer arietinum
Ca_17971
I
0.783
Ca_10901
Cicer arietinum
Ca_10901
I
0.783
Ca_07170
Cicer arietinum
Ca_07170
I
0.783
Si002195m.g
Setaria italica
Si002195m.g
I
0.783
Sb03g006790
Sorghum bicolor
Sb03g006790
I
0.783
OPUNC01G11270
Oryza punctata
OPUNC01G11270
I
0.783
ORUFI01G12420
Oryza rufipogon
ORUFI01G12420
I
0.783
ONIVA01G13810
Oryza nivara
ONIVA01G13810
I
0.783
OBART01G11380
Oryza barthii
OBART01G11380
I
0.783
OB01G21470
Oryza brachyantha
OB01G21470
I
0.783
TGA2.3
Oryza sativa
OS01G0279900
I
0.783
PGSC0003DMG400009449
Solanum tuberosum
PGSC0003DMG400009449
I
0.783
POPTR_0016s03590
Populus trichocarpa
POPTR_0016s03590
I
0.783
PRUPE_ppa005279mg
Prunus persica
PRUPE_ppa005279mg
I
0.783
PAN
Populus trichocarpa
POPTR_0008s11710
I
0.783
POPTR_0006s03720
Populus trichocarpa
POPTR_0006s03720
I
0.783
POPTR_0001s06700
Populus trichocarpa
POPTR_0001s06700
I
0.783
Cla022393
Citrullus lanatus
Cla022393
I
0.783