CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Fb01824
(
Panicum virgatum
)
bZIP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00170 (bZIP_1)
IPR011616
Pavir.Fb01824
T072396_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS02G0728001
M01826_2.00
Oryza sativa
NHCACGTGKNN
NNMCACGTGDN
PBM
Weirauch et al.(2014)
pTH8334
0.786
0.683
OS02G0728001
M01827_2.00
Oryza sativa
WSACGTGG
CCACGTSW
PBM
Weirauch et al.(2014)
pTH8737
0.786
0.683
For this family, TFs with SR scores >
0.782
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Fb01824.1.p
bZIP
109
171
AEEERRRRRMVSNRESARRSRMRKQRQLTELWAQVSHLRGDNRRLLDDLNRALRGCADARRES
Links
Other
bZIP
family TFs
Other
Panicum virgatum
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC186606.4_FG003
Zea mays
AC186606.4_FG003
I
0.860
Sb07g028960
Sorghum bicolor
Sb07g028960
I
0.860
Sb07g028900
Sorghum bicolor
Sb07g028900
I
0.860
Pavir.Fa00602
Panicum virgatum
Pavir.Fa00602
I
0.860
OMERI08G14760
Oryza meridionalis
OMERI08G14760
I
0.848
OBART08G18720
Oryza barthii
OBART08G18720
I
0.848
OGLUM08G19690
Oryza glumaepatula
OGLUM08G19690
I
0.848
ORUFI08G08020
Oryza rufipogon
ORUFI08G08020
I
0.848
OS08G0487100
Oryza sativa
OS08G0487100
I
0.848
LPERR08G15570
Leersia perrieri
LPERR08G15570
I
0.848
ORGLA08G0162900
Oryza glaberrima
ORGLA08G0162900
I
0.848
ONIVA08G20730
Oryza nivara
ONIVA08G20730
I
0.848
BGIOSGA026766
Oryza indica
BGIOSGA026766
I
0.848
BRADI4G32920
Brachypodium distachyon
BRADI4G32920
I
0.846
Si014433m.g
Setaria italica
Si014433m.g
I
0.844
GRMZM2G144480
Zea mays
GRMZM2G144480
I
0.842
Traes_5BL_C559EFC8A
Triticum aestivum
Traes_5BL_C559EFC8A
I
0.839
Traes_5DL_591F8EFBD
Triticum aestivum
Traes_5DL_591F8EFBD
I
0.839
OPUNC08G16670
Oryza punctata
OPUNC08G16670
I
0.830
ONIVA09G14270
Oryza nivara
ONIVA09G14270
I
0.818
OLONG_013604
Oryza longistaminata
OLONG_013604
I
0.818
ORGLA09G0104900
Oryza glaberrima
ORGLA09G0104900
I
0.818
OPUNC09G12240
Oryza punctata
OPUNC09G12240
I
0.818
ORUFI09G14730
Oryza rufipogon
ORUFI09G14730
I
0.818
OPUNC09G12140
Oryza punctata
OPUNC09G12140
I
0.818
OS09G0474000
Oryza sativa
OS09G0474000
I
0.818
OBART09G13760
Oryza barthii
OBART09G13760
I
0.818
OB09G20300
Oryza brachyantha
OB09G20300
I
0.818
LPERR09G10020
Leersia perrieri
LPERR09G10020
I
0.818
BGIOSGA029595
Oryza indica
BGIOSGA029595
I
0.818
OBART09G13750
Oryza barthii
OBART09G13750
I
0.818
OGLUM09G14340
Oryza glumaepatula
OGLUM09G14340
I
0.818
OB08G25840
Oryza brachyantha
OB08G25840
N
0.813
GLYMA11G04920
Glycine max
GLYMA11G04920
I
0.811
Pavir.Ba01782
Panicum virgatum
Pavir.Ba01782
I
0.806
Pavir.Bb02514
Panicum virgatum
Pavir.Bb02514
I
0.806
MLOC_6062
Hordeum vulgare
MLOC_6062
N
0.805
BRADI3G38840
Brachypodium distachyon
BRADI3G38840
N
0.805
GRMZM2G358796
Zea mays
GRMZM2G358796
N
0.805
Si031238m.g
Setaria italica
Si031238m.g
I
0.804
MTR_5g015090
Medicago truncatula
MTR_5g015090
I
0.802
GLYMA01G40370
Glycine max
GLYMA01G40370
I
0.801
GLYMA17G17100
Glycine max
GLYMA17G17100
I
0.801
Sb02g027410
Sorghum bicolor
Sb02g027410
I
0.797
Ca_09362
Cicer arietinum
Ca_09362
I
0.794
GRMZM2G020799
Zea mays
GRMZM2G020799
I
0.788
BGIOSGA008968
Oryza indica
BGIOSGA008968
I
0.786
Lus10011722.g
Linum usitatissimum
Lus10011722.g
I
0.786
ORGLA02G0265300
Oryza glaberrima
ORGLA02G0265300
I
0.786
OLONG_004835
Oryza longistaminata
OLONG_004835
I
0.786
OGLUM02G31690
Oryza glumaepatula
OGLUM02G31690
I
0.786
OBART02G31030
Oryza barthii
OBART02G31030
I
0.786
OMERI02G29910
Oryza meridionalis
OMERI02G29910
I
0.786
OS02G0728001
Oryza sativa
OS02G0728001
D
0.786
ORUFI02G32700
Oryza rufipogon
ORUFI02G32700
I
0.786
OPUNC02G28720
Oryza punctata
OPUNC02G28720
I
0.786
ONIVA02G34180
Oryza nivara
ONIVA02G34180
I
0.786
chr2.CM0021.50.nd
Lotus japonicus
chr2.CM0021.50.nd
I
0.785
cassava35454.valid.m1
Manihot esculenta
cassava35454.valid.m1
I
0.785
Lus10019273.g
Linum usitatissimum
Lus10019273.g
N
0.784
Aquca_006_00040
Aquilegia coerulea
Aquca_006_00040
I
0.783