CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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IDD9
(
Arabidopsis thaliana
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
AT3G45260
T080854_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IDD9
M01060_2.00
Arabidopsis thaliana
NNNHRDHNNN
NNNDHYDNNN
PBM
Sullivan et al.(2014)
pTH7162
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
IDD1
M06824_2.00
Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH
Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a
0.763
0.930
IDD1
M06825_2.00
Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW
Dap-seq
OMalley et al.(2016)
At5g66730_col
0.763
0.930
IDD2
M01061_2.00
Arabidopsis thaliana
NHTTGTHNNN
NNNDACAADN
PBM
Sullivan et al.(2014)
pTH7537
0.768
0.924
JKD
M06818_2.00
Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD
Dap-seq
OMalley et al.(2016)
JKD_col_a
0.759
0.884
IDD2
M06815_2.00
Arabidopsis thaliana
TTTTGTCKTTTWVYD
HRBWAAAMGACAAAA
Dap-seq
OMalley et al.(2016)
IDD2_col_a
0.768
0.924
IDD2
M06816_2.00
Arabidopsis thaliana
NNNTTTTGTCKTHTWNBD
HVNWADAMGACAAAANNN
Dap-seq
OMalley et al.(2016)
IDD2_colamp_a
0.768
0.924
For this family, TFs with SR scores >
0.755
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01060_2.00
C2H2 ZF
51
73
FICEVCNKGFKRDQNLQLHRRGH
M01060_2.00
C2H2 ZF
128
149
WKCDKCSKKYAVMSDWKAHSKI
M01060_2.00
C2H2 ZF
148
174
KICGTKEYRCDCGTLFSRKDSFITHRA
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G45260.1
C2H2 ZF
145
166
WKCDKCSKKYAVMSDWKAHSKI
AT3G45260.1
C2H2 ZF
165
191
KICGTKEYRCDCGTLFSRKDSFITHRA
AT3G45260.2
C2H2 ZF
68
90
FICEVCNKGFKRDQNLQLHRRGH
AT3G45260.2
C2H2 ZF
145
166
WKCDKCSKKYAVMSDWKAHSKI
AT3G45260.2
C2H2 ZF
165
191
KICGTKEYRCDCGTLFSRKDSFITHRA
Links
Other
C2H2 ZF
family TFs
Other
Arabidopsis thaliana
TFs
282 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy