CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo3g023850
(
Brassica oleracea
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Bo3g023850
T081726_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YY1
M01443_2.00
Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN
PBM
Najafabadi et al.(2015a)
pTH11160
0.817
0.922
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo3g023850.1
C2H2 ZF
317
341
FLCSYDGCGKIFFDVSALRKHSHIH
Bo3g023850.1
C2H2 ZF
346
370
YVCDYPGCDKKFLDSSKLKRHWLIH
Bo3g023850.1
C2H2 ZF
376
400
FVCTYQGCGKAFSLDFNLRSHMKTH
Bo3g023850.1
C2H2 ZF
406
431
HICPYSGCGKRYAYEYKLKNHVAAYH
Bo3g023850.1
C2H2 ZF
470
495
YACPYEGCDKDYIHEYKLKLHLKREH
Links
Other
C2H2 ZF
family TFs
Other
Brassica oleracea
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy