PRDM6 (Choloepus hoffmanni)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCHOG00000003085 T088775_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN

NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.827 1.000
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB

VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000002735 C2H2 ZF 299 320
ENSCHOP00000002735 C2H2 ZF 327 349
ENSCHOP00000002735 C2H2 ZF 355 377
ENSCHOP00000002735 C2H2 ZF 383 404

Links

Other C2H2 ZF family TFs
Other Choloepus hoffmanni TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ERF118 Arabidopsis thaliana AT1G68550 D 0.000
PK24580.1 Cannabis sativa PK24580.1 D 0.000
Ca_05485 Cicer arietinum Ca_05485 I 0.000
Cla021763 Citrullus lanatus Cla021763 I 0.000
Cla008128 Citrullus lanatus Cla008128 I 0.000
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.000
Cucsa.256230 Cucumis sativus Cucsa.256230 I 0.000
gene25185-v1.0-hybrid Fragaria vesca gene25185-v1.0-hybrid I 0.000
gene03751-v1.0-hybrid Fragaria vesca gene03751-v1.0-hybrid I 0.000
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.000
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.000
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.000
Lus10007841.g Linum usitatissimum Lus10007841.g I 0.000
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.000
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.000
chr2.CM0903.260.nd Lotus japonicus chr2.CM0903.260.nd I 0.000
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.000
MDP0000119956 Malus domestica MDP0000119956 I 0.000
MDP0000743350 Malus domestica MDP0000743350 I 0.000
MDP0000759299 Malus domestica MDP0000759299 I 0.000
Pm029052 Prunus mume Pm029052 I 0.000
PRUPE_ppa008514mg Prunus persica PRUPE_ppa008514mg I 0.000
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.000
Solyc05g009450.1 Solanum lycopersicum Solyc05g009450.1 I 0.000
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.000
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.000