CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM6
(
Callithrix jacchus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCJAG00000017318
T089578_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM6
M08277_2.00
Homo sapiens
TTTTYYWBHHTTTYYHYTBYN
NRVARDRRAAADDVWRRAAAA
ChIP-seq
Schmitges et al.(2016)
Q9NQX0.MEME
0.827
1.000
PRDM6
M08855_2.00
Homo sapiens
NNKTTTTCYYBYB
VRVRRGAAAAMNN
Misc
Kulakovskiy et al.(2013)
PRDM6_HUMAN.H11MO.0.C
0.827
1.000
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000031870
C2H2 ZF
275
296
WKCGQCFKTFTQRILLQMHVCT
ENSCJAP00000031870
C2H2 ZF
303
325
YQCGHCSQSFSQPSELRNHVVTH
ENSCJAP00000031870
C2H2 ZF
331
353
FKCGYCGRAFAGATTLNNHIRTH
ENSCJAP00000031870
C2H2 ZF
359
380
FKCERCERSFTQATQLSRHQRM
ENSCJAP00000044308
C2H2 ZF
469
490
WKCGQCFKTFTQRILLQMHVCT
ENSCJAP00000044308
C2H2 ZF
497
519
YQCGHCSQSFSQPSELRNHVVTH
ENSCJAP00000044308
C2H2 ZF
525
547
FKCGYCGRAFAGATTLNNHIRTH
Links
Other
C2H2 ZF
family TFs
Other
Callithrix jacchus
TFs
59 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy