CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSCPOG00000001490
(
Cavia porcellus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSCPOG00000001490
T089782_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF250
M04619_2.00
Homo sapiens
NYASGCCYAY
RTRGGCSTRN
SELEX
Yin et al.(2017)
ZNF250_eDBD_HT-SELEX
0.816
0.977
ZNF250
M08370_2.00
Homo sapiens
CYYTGCAGB
VCTGCARRG
ChIP-seq
Schmitges et al.(2016)
P15622_1-3.RCADE
0.816
0.977
ZNF250
M08264_2.00
Homo sapiens
YVDTGCAHTTTTBNB
VNVAAAADTGCAHBR
ChIP-seq
Najafabadi et al.(2015b)
ZNF250
0.816
0.977
ZNF250
M08944_2.00
Homo sapiens
TACCATRCTGTTTTGRTTAC
GTAAYCAAAACAGYATGGTA
Misc
Kulakovskiy et al.(2013)
ZN250_HUMAN.H11MO.0.C
0.816
0.977
ZNF250
M04620_2.00
Homo sapiens
NTAGGCCTAN
NTAGGCCTAN
SELEX
Yin et al.(2017)
ZNF250_eDBD_Methyl-HT-SELEX
0.816
0.977
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCPOP00000001346
C2H2 ZF
199
221
FICIECGKCFGRSSHLLQHQRIH
ENSCPOP00000001346
C2H2 ZF
227
249
YVCSVCGKAFSQSSVLSKHRRIH
ENSCPOP00000001346
C2H2 ZF
255
277
YECNECGKAFRVSSDLAQHHKIH
ENSCPOP00000001346
C2H2 ZF
283
305
HECLECRKAFTQLSHLIQHQRIH
ENSCPOP00000001346
C2H2 ZF
311
333
YVCPLCGKAFNHSTVLRSHQRVH
ENSCPOP00000001346
C2H2 ZF
339
361
HQCGECGKTFSVKRTLLQHQRSH
ENSCPOP00000001346
C2H2 ZF
367
389
YTCSECGKAFSDRSVLIQHHNVH
ENSCPOP00000001346
C2H2 ZF
395
417
YECSECGKTFSHRSTLMNHERIH
ENSCPOP00000001346
C2H2 ZF
423
445
YACYECGKAFVQHSHLIQHQRVH
ENSCPOP00000001346
C2H2 ZF
451
473
YVCNECGHAFSARRSLIQHERIH
ENSCPOP00000001346
C2H2 ZF
479
501
FQCTECGKAFSLKATLIVHLRTH
ENSCPOP00000001346
C2H2 ZF
507
529
YECNSCGKAFSQYSVLIQHQRIH
ENSCPOP00000001346
C2H2 ZF
535
557
YECGECGRAFNQHGHLIQHQKVH
Links
Other
C2H2 ZF
family TFs
Other
Cavia porcellus
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy