gfi1ab (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000044457 T090929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.823 0.971
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.823 0.971
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.823 0.971
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.823 0.971
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.823 0.971
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.823 0.971
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.823 0.971
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.823 0.971
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.821 0.964
GFI1
M00237_2.00
Homo sapiens
ATATCAVD

HBTGATAT
PBM
Barrera et al.(2016)
GFI1_N382S
0.787 0.964
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.784 0.884
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.784 0.884
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.784 0.884
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.784 0.884
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.784 0.884
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.784 0.884
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.782 0.877
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.782 0.877
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.782 0.877
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.774 0.877
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.773 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000065138 C2H2 ZF 229 252
ENSDARP00000065138 C2H2 ZF 258 280
ENSDARP00000065138 C2H2 ZF 286 308
ENSDARP00000065138 C2H2 ZF 314 336
ENSDARP00000065138 C2H2 ZF 342 364
ENSDARP00000065138 C2H2 ZF 370 393

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.823
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.823
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.823
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.784
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.822
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.784
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.823
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.817
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.812
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.772
GFI1 Bos taurus ENSBTAG00000016723 I 0.825
GFI1B Bos taurus ENSBTAG00000012772 I 0.772
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.782
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.823
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.823
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.784
Aan_R008865 Calypte anna Aan_R008865 I 0.784
Aan_R000889 Calypte anna Aan_R000889 I 0.823
GFI1 Canis familiaris ENSCAFG00000020155 I 0.823
GFI1B Canis familiaris ENSCAFG00000019877 I 0.784
CapteG45287 Capitella teleta CapteG45287 I 0.762
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.784
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.820
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.822
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.789
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.782
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.767
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.775
gfi1aa Danio rerio ENSDARG00000020746 I 0.817
gfi1b Danio rerio ENSDARG00000079947 I 0.784
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.784
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.823
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.782
GF15430 Drosophila ananassae FBgn0092455 I 0.773
GG10437 Drosophila erecta FBgn0102746 I 0.773
GH13715 Drosophila grimshawi FBgn0121191 I 0.773
sens-2 Drosophila melanogaster FBgn0051632 D 0.773
GI23984 Drosophila mojavensis FBgn0146708 I 0.773
GL26188 Drosophila persimilis FBgn0163770 I 0.773
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.773
GM16223 Drosophila sechellia FBgn0171139 I 0.773
GJ21268 Drosophila virilis FBgn0208401 I 0.773
GK24242 Drosophila willistoni FBgn0226203 I 0.773
GE14143 Drosophila yakuba FBgn0231766 I 0.773
GFI1 Equus caballus ENSECAG00000006647 I 0.825
GFI1B Equus caballus ENSECAG00000008127 I 0.782
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.823
GFI1B Felis catus ENSFCAG00000027147 I 0.786
GFI1 Felis catus ENSFCAG00000005914 I 0.823
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.784
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.823
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.782
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.791
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.823
GFI1B Gallus gallus ENSGALG00000003478 I 0.784
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.809
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.808
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.786
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.784
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.823
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.823
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.784
GFI1 Homo sapiens ENSG00000162676 D 0.823
GFI1B Homo sapiens ENSG00000165702 D 0.784
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.823
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.785
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.825
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.788
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.822
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.784
LotgiG83709 Lottia gigantea LotgiG83709 I 0.769
LotgiG129344 Lottia gigantea LotgiG129344 I 0.773
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.779
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.823
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.782
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.810
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.772
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.823
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.823
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.784
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.783
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.823
MDOA011065 Musca domestica MDOA011065 I 0.773
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.823
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.784
Gfi1 Mus musculus ENSMUSG00000029275 D 0.823
Gfi1b Mus musculus ENSMUSG00000026815 D 0.782
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.765
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.825
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.769
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.823
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.784
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.823
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.822
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.776
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.824
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.803
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.780
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.784
gfi1b Oryzias latipes ENSORLG00000014390 I 0.774
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.803
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.823
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.786
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.784
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.823
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.782
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.786
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.820
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.825
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.803
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.784
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.819
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.784
GFI1B Procavia capensis ENSPCAG00000012329 I 0.784
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.825
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.784
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.823
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.769
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.765
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.790
GFI1 Sus scrofa ENSSSCG00000006902 I 0.825
GFI1B Sus scrofa ENSSSCG00000005737 I 0.786
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.823
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.799
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.774
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.816
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.772
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.815
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.774
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.825
Tal_R006464 Tyto alba Tal_R006464 I 0.823
Tal_R001363 Tyto alba Tal_R001363 I 0.788
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.768
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.768
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.822
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.803