CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfi1
(
Mus musculus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSMUSG00000029275
T101083_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN
NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.827
1.000
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.827
1.000
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS
SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.827
1.000
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY
RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.827
1.000
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.827
1.000
GFI1
M10236_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.827
1.000
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.827
1.000
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN
NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.825
0.993
GFI1
M00237_2.00
Homo sapiens
ATATCAVD
HBTGATAT
PBM
Barrera et al.(2016)
GFI1_N382S
0.790
0.993
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.781
0.877
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.781
0.877
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH
DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.781
0.877
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY
RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.781
0.877
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH
DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.781
0.877
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC
GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.781
0.877
GFI1B
M10243_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.781
0.877
GFI1B
M10244_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.781
0.877
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.781
0.877
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.774
0.848
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN
NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.771
0.870
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000134960
C2H2 ZF
1
19
MCGKTFGHAVSLEQHKAVH
ENSMUSP00000134960
C2H2 ZF
25
47
FDCKICGKSFKRSSTLSTHLLIH
ENSMUSP00000134960
C2H2 ZF
53
75
YPCQYCGKRFHQKSDMKKHTFIH
ENSMUSP00000134960
C2H2 ZF
81
103
HKCQVCGKAFSQSSNLITHSRKH
ENSMUSP00000134960
C2H2 ZF
109
132
FGCDLCGKGFQRKVDLRRHRETQH
ENSMUSP00000135039
C2H2 ZF
322
345
YKCIKCSKVFSTPHGLEVHVRRSH
ENSMUSP00000135039
C2H2 ZF
351
373
FACEMCGKTFGHAVSLEQHKAVH
ENSMUSP00000135039
C2H2 ZF
379
401
FDCKICGKSFKRSSTLSTHLLIH
ENSMUSP00000135039
C2H2 ZF
407
429
YPCQYCGKRFHQKSDMKKHTFIH
ENSMUSP00000135039
C2H2 ZF
435
457
HKCQVCGKAFSQSSNLITHSRKH
ENSMUSP00000135039
C2H2 ZF
463
486
FGCDLCGKGFQRKVDLRRHRETQH
ENSMUSP00000135884
C2H2 ZF
256
279
YKCIKCSKVFSTPHGLEVHVRRSH
ENSMUSP00000135884
C2H2 ZF
285
307
FACEMCGKTFGHAVSLEQHKAVH
ENSMUSP00000135884
C2H2 ZF
313
335
FDCKICGKSFKRSSTLSTHLLIH
ENSMUSP00000135884
C2H2 ZF
341
363
YPCQYCGKRFHQKSDMKKHTFIH
ENSMUSP00000135884
C2H2 ZF
369
391
HKCQVCGKAFSQSSNLITHSRKH
ENSMUSP00000135884
C2H2 ZF
397
420
FGCDLCGKGFQRKVDLRRHRETQH
ENSMUSP00000137229
C2H2 ZF
256
279
YKCIKCSKVFSTPHGLEVHVRRSH
ENSMUSP00000137229
C2H2 ZF
285
307
FACEMCGKTFGHAVSLEQHKAVH
ENSMUSP00000137229
C2H2 ZF
313
335
FDCKICGKSFKRSSTLSTHLLIH
ENSMUSP00000137229
C2H2 ZF
341
363
YPCQYCGKRFHQKSDMKKHTFIH
ENSMUSP00000137229
C2H2 ZF
369
391
HKCQVCGKAFSQSSNLITHSRKH
ENSMUSP00000137229
C2H2 ZF
397
420
FGCDLCGKGFQRKVDLRRHRETQH
Links
Other
C2H2 ZF
family TFs
Other
Mus musculus
TFs
139 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy