Bcl6b (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000059956 T109362_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including regulation of gene expression; regulation of inflammatory response; and type 2 immune response. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human BCL6B (BCL6B transcription repressor). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bcl6b
M00128_2.00 		Mus musculus
NYYYTYCYWNNN
NNNWRGRARRRN		 PBM
Badis et al.(2009)
Bcl6b_0961 		0.825 0.991
BCL6B
M02896_2.00 		Homo sapiens
TGCTTTCTAGGAATTMM
KKAATTCCTAGAAAGCA		 SELEX
Jolma et al.(2013)
BCL6B_1 		0.815 0.974
BCL6B
M04499_2.00 		Homo sapiens
NNGCTTTCKAGGAAHN
NDTTCCTMGAAAGCNN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_1 		0.815 0.974
BCL6B
M04500_2.00 		Homo sapiens
NDTTCCTCGATTRCVN
NBGYAATCGAGGAAHN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_2 		0.815 0.974
BCL6B
M04501_2.00 		Homo sapiens
NHGCTTTCTAGGAAHN
NDTTCCTAGAAAGCDN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_1 		0.815 0.974
BCL6B
M04502_2.00 		Homo sapiens
NWTTCCTAGATTACRN
NYGTAATCTAGGAAWN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_2 		0.815 0.974
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000071137 C2H2 ZF 321 343
ENSRNOP00000071137 C2H2 ZF 349 371
ENSRNOP00000071137 C2H2 ZF 377 399
ENSRNOP00000071137 C2H2 ZF 405 427
ENSRNOP00000071137 C2H2 ZF 433 456

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

Invalid Input OrderBy

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action