snai3 (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000002385 T112221_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SNAI1
M04441_2.00
Homo sapiens
NVCACCTGYN

NRCAGGTGBN
SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX
0.779 0.846
SNAI1
M04443_2.00
Homo sapiens
TRCACCTGYN

NRCAGGTGYA
SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX
0.779 0.846
SNAI1
M08303_2.00
Homo sapiens
NNNNGCACCTGCYNB

VNRGCAGGTGCNNNN
ChIP-seq
Schmitges et al.(2016)
O95863.MEME
0.779 0.846
SNAI1
M08886_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C
0.779 0.846
SNAI1
M10201_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q4
0.779 0.846
SNAI1
M10202_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SNA_Q6
0.779 0.846
SNAI1
M04442_2.00
Homo sapiens
NRCACCTGYN

NRCAGGTGYN
SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX
0.779 0.846
SNAI1
M04444_2.00
Homo sapiens
YRCACCTGYN

NRCAGGTGYR
SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX
0.779 0.846
Snai1
M00781_2.00
Mus musculus
NNNTGTCANN

NNTGACANNN
PBM
Weirauch et al.(2013)
pTH2340
0.779 0.835
Snai1
M09002_2.00
Mus musculus
VCACCTGB

VCAGGTGB
Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C
0.779 0.835
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000005504 C2H2 ZF 179 201
ENSTRUP00000005504 C2H2 ZF 205 227
ENSTRUP00000005504 C2H2 ZF 233 255
ENSTRUP00000005504 C2H2 ZF 261 282
ENSTRUP00000005505 C2H2 ZF 155 177
ENSTRUP00000005505 C2H2 ZF 181 203
ENSTRUP00000005505 C2H2 ZF 209 231
ENSTRUP00000005505 C2H2 ZF 237 258
ENSTRUP00000005506 C2H2 ZF 145 167
ENSTRUP00000005506 C2H2 ZF 171 193
ENSTRUP00000005506 C2H2 ZF 199 221
ENSTRUP00000005506 C2H2 ZF 227 248

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Snai1 Mus musculus ENSMUSG00000042821 D 0.779
SNAI1 Homo sapiens ENSG00000124216 D 0.779
ENSOARG00000013174 Ovis aries ENSOARG00000013174 I 0.779
SNAI1 Oryctolagus cuniculus ENSOCUG00000005422 I 0.757
SNAI1 Otolemur garnettii ENSOGAG00000030111 I 0.779
ENSPANG00000007536 Papio anubis ENSPANG00000007536 I 0.779
SNAI1 Procavia capensis ENSPCAG00000011934 I 0.779
SNAI1 Pan troglodytes ENSPTRG00000013614 I 0.779
SNAI1 Pteropus vampyrus ENSPVAG00000004119 I 0.779
Snai1 Rattus norvegicus ENSRNOG00000009594 I 0.779
ENSSTOG00000005866 Ictidomys tridecemlineatus ENSSTOG00000005866 I 0.779
SNAI1 Tupaia belangeri ENSTBEG00000012262 I 0.779
ENSTNIG00000004434 Tetraodon nigroviridis ENSTNIG00000004434 I 0.808
SNAI1 Tursiops truncatus ENSTTRG00000002029 I 0.779
ENSBTAP00000019345-D1 Bos grunniens ENSBTAP00000019345-D1 I 0.779
Myotis_brandtii_SNAI1_10026057 Myotis brandtii Myotis_brandtii_SNAI1_10026057 I 0.777
Myotis_brandtii_SNAI1_10026379 Myotis brandtii Myotis_brandtii_SNAI1_10026379 I 0.778
ENSNLEG00000006985 Nomascus leucogenys ENSNLEG00000006985 I 0.779
ENSAMEG00000013478 Ailuropoda melanoleuca ENSAMEG00000013478 I 0.779
SNAI1 Bos taurus ENSBTAG00000014554 I 0.779
SNAI1 Canis familiaris ENSCAFG00000011499 I 0.779
SNAI1 Callithrix jacchus ENSCJAG00000000518 I 0.779
SNAI1 Cavia porcellus ENSCPOG00000026663 I 0.779
ENSCSAG00000015065 Chlorocebus sabaeus ENSCSAG00000015065 I 0.779
snai3 Danio rerio ENSDARG00000031243 I 0.780
SNAI1 Dasypus novemcinctus ENSDNOG00000023834 I 0.779
SNAI1 Equus caballus ENSECAG00000009787 I 0.772
ENSETEG00000016371 Echinops telfairi ENSETEG00000016371 I 0.779
SNAI1 Felis catus ENSFCAG00000010558 I 0.767
SNAI1 Gorilla gorilla ENSGGOG00000024422 I 0.779
SNAI1 Loxodonta africana ENSLAFG00000030265 I 0.767
ENSMICG00000011160 Microcebus murinus ENSMICG00000011160 I 0.779
ENSMLUG00000015053 Myotis lucifugus ENSMLUG00000015053 I 0.779
ENSMMUG00000019719 Macaca mulatta ENSMMUG00000019719 I 0.779
ENSMPUG00000017558 Mustela putorius furo ENSMPUG00000017558 I 0.779
XP_002933720 Xenopus tropicalis XP_002933720 N 0.777