CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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bcl11ba
(
Takifugu rubripes
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSTRUG00000003531
T112237_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.817
0.982
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.817
0.982
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.811
0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.811
0.947
BCL11A
M10187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.811
0.947
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000008285
C2H2 ZF
431
452
SCEFCGKTFKFQSNLVVHRRSH
ENSTRUP00000008285
C2H2 ZF
458
480
YKCQLCDHACSQASKLKRHMKTH
ENSTRUP00000008285
C2H2 ZF
768
790
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000008285
C2H2 ZF
796
818
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008285
C2H2 ZF
826
849
YRCDICQMPFSVYSTLEKHMKKWH
ENSTRUP00000008286
C2H2 ZF
421
442
SCEFCGKTFKFQSNLVVHRRSH
ENSTRUP00000008286
C2H2 ZF
448
470
YKCQLCDHACSQASKLKRHMKTH
ENSTRUP00000008286
C2H2 ZF
758
780
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000008286
C2H2 ZF
786
808
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008286
C2H2 ZF
816
839
YRCDICQMPFSVYSTLEKHMKKWH
ENSTRUP00000008287
C2H2 ZF
396
417
SCEFCGKTFKFQSNLVVHRRSH
ENSTRUP00000008287
C2H2 ZF
423
445
YKCQLCDHACSQASKLKRHMKTH
ENSTRUP00000008287
C2H2 ZF
733
755
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000008287
C2H2 ZF
761
783
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008287
C2H2 ZF
791
814
YRCDICQMPFSVYSTLEKHMKKWH
ENSTRUP00000008288
C2H2 ZF
360
381
SCEFCGKTFKFQSNLVVHRRSH
ENSTRUP00000008288
C2H2 ZF
387
409
YKCQLCDHACSQASKLKRHMKTH
ENSTRUP00000008288
C2H2 ZF
697
719
DTCEFCGKVFKNCSNLTVHRRSH
ENSTRUP00000008288
C2H2 ZF
725
747
YKCELCNYACAQSSKLTRHMKTH
ENSTRUP00000008288
C2H2 ZF
755
778
YRCDICQMPFSVYSTLEKHMKKWH
Links
Other
C2H2 ZF
family TFs
Other
Takifugu rubripes
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy