bcl11ba (Takifugu rubripes)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTRUG00000003531 T112237_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BCL11B
M04453_2.00
Homo sapiens
GTGAACGBNDNNVCTACAC

GTGTAGBNNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX
0.817 0.982
BCL11B
M04454_2.00
Homo sapiens
GTGAACGBNDNHVCTACAC

GTGTAGBDNHNVCGTTCAC
SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX
0.817 0.982
BCL11A
M07926_2.00
Homo sapiens
BTYTCASTTCCYYHH

DDRRGGAASTGARAV
ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha
0.811 0.947
BCL11A
M08881_2.00
Homo sapiens
BHBYCABTTCCYBHNYN

NRNDVRGGAAVTGRVDV
Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A
0.811 0.947
BCL11A
M10187_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BCL11A_02
0.811 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000008285 C2H2 ZF 431 452
ENSTRUP00000008285 C2H2 ZF 458 480
ENSTRUP00000008285 C2H2 ZF 768 790
ENSTRUP00000008285 C2H2 ZF 796 818
ENSTRUP00000008285 C2H2 ZF 826 849
ENSTRUP00000008286 C2H2 ZF 421 442
ENSTRUP00000008286 C2H2 ZF 448 470
ENSTRUP00000008286 C2H2 ZF 758 780
ENSTRUP00000008286 C2H2 ZF 786 808
ENSTRUP00000008286 C2H2 ZF 816 839
ENSTRUP00000008287 C2H2 ZF 396 417
ENSTRUP00000008287 C2H2 ZF 423 445
ENSTRUP00000008287 C2H2 ZF 733 755
ENSTRUP00000008287 C2H2 ZF 761 783
ENSTRUP00000008287 C2H2 ZF 791 814
ENSTRUP00000008288 C2H2 ZF 360 381
ENSTRUP00000008288 C2H2 ZF 387 409
ENSTRUP00000008288 C2H2 ZF 697 719
ENSTRUP00000008288 C2H2 ZF 725 747
ENSTRUP00000008288 C2H2 ZF 755 778

Links

Other C2H2 ZF family TFs
Other Takifugu rubripes TFs

Invalid Input OrderBy

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action